Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 AC098592.1-201ENST00000419352 333 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 HSPD1P21-201ENST00000436541 245 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 AC112653.1-201ENST00000443851 386 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 AL591719.1-201ENST00000444669 744 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 RBMY2UP-201ENST00000453474 324 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 AC017015.1-201ENST00000477387 286 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 AP001025.2-201ENST00000490908 477 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 AC106872.3-201ENST00000495104 446 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 VN1R104P-201ENST00000505115 1009 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 AC109464.2-201ENST00000510242 943 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 AC034159.1-201ENST00000513885 583 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 SNORA3.4-201ENST00000515969 96 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 PAICSP4-201ENST00000517543 1253 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 IGKV2-26-201ENST00000518305 343 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 CASC16-202ENST00000563844 610 ntTSL 3 BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 AC112187.2-201ENST00000604345 283 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 BCRP9-201ENST00000605312 388 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 AL158211.4-201ENST00000606988 584 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 AP002826.1-201ENST00000608835 315 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 MIR6810-201ENST00000622701 70 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 AC243312.2-201ENST00000623340 601 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 PCMTD1P7-201ENST00000634506 357 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 AL034408.1-202ENST00000636088 415 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 AC127502.3-201ENST00000636170 1206 ntBASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.49□□□□□ -2.01
RPUSD4Q96CM3 MTCO1P9-201ENST00000505577 1534 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 RNU6-1078P-201ENST00000364522 103 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 Y_RNA.302-201ENST00000364997 102 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 U3.20-201ENST00000390909 217 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 SNORD88.1-201ENST00000408684 91 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 RNU6-1077P-201ENST00000410506 102 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 DNAJA1P2-201ENST00000421360 1197 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 NDUFB4P7-201ENST00000423198 363 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AC234781.2-201ENST00000426370 994 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 SNRPEP4-201ENST00000435815 279 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AL354941.1-201ENST00000438600 464 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AC092641.1-201ENST00000440229 772 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 RPL21P23-201ENST00000446654 460 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 ZNF736P8Y-201ENST00000451913 669 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 GSTA11P-201ENST00000452866 669 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AC234775.1-201ENST00000454247 670 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AC008571.1-201ENST00000467232 300 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 RPS23P3-201ENST00000470993 430 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 RPL23AP11-201ENST00000475260 469 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AC004263.1-201ENST00000479327 332 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 MTND1P22-201ENST00000510572 951 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 MTCYBP43-201ENST00000513621 740 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 RNU6-1129P-201ENST00000515964 104 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 RNA5SP76-201ENST00000516277 87 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 IGKV3OR22-2-201ENST00000517943 313 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AC005476.1-201ENST00000554427 397 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 UBE2L4-201ENST00000587688 464 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AP000811.1-201ENST00000603803 651 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AC068313.1-201ENST00000604028 1008 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AC009570.1-201ENST00000609599 745 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AC068831.7-201ENST00000616954 363 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AL158801.5-201ENST00000623123 465 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AP002791.1-201ENST00000623291 381 ntBASIC2.48□□□□□ -2.01
RPUSD4Q96CM3 AC079597.1-201ENST00000624306 508 ntBASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms