Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
USP41Q3LFD5 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
USP41Q3LFD5 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
USP41Q3LFD5 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
USP41Q3LFD5 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
USP41Q3LFD5 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
USP41Q3LFD5 FGF7P2-201ENST00000332473 296 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
USP41Q3LFD5 RNY4P24-201ENST00000362735 96 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 RNA5SP42-201ENST00000364278 115 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.67□□□□□ -1.82
USP41Q3LFD5 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
USP41Q3LFD5 AC017079.2-201ENST00000416102 485 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 RPL31P12-201ENST00000422587 358 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 AL356583.2-201ENST00000426536 280 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 AC006989.1-201ENST00000427212 131 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 VN1R108P-201ENST00000431580 830 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 RPL21P112-201ENST00000434403 463 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 MTCO1P19-201ENST00000443487 500 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 AC234775.1-201ENST00000454247 670 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.67□□□□□ -1.82
USP41Q3LFD5 AP1S2P1-201ENST00000457344 379 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 CEACAMP4-201ENST00000457676 421 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 SNORD121B-201ENST00000458838 81 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.67□□□□□ -1.82
USP41Q3LFD5 AC010285.1-201ENST00000470580 392 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.67□□□□□ -1.82
USP41Q3LFD5 FABP5P5-201ENST00000515537 406 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC3.67□□□□□ -1.82
USP41Q3LFD5 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.67□□□□□ -1.82
USP41Q3LFD5 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.67□□□□□ -1.82
USP41Q3LFD5 AC087481.2-201ENST00000565492 330 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 AC006362.1-201ENST00000567392 174 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 MIR5047-201ENST00000579212 100 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.67□□□□□ -1.82
USP41Q3LFD5 MIR7112-201ENST00000616126 65 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 AC104010.1-201ENST00000616889 150 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 MIR8057-201ENST00000620957 69 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 AC009878.1-201ENST00000621819 340 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 AC079597.1-201ENST00000624306 508 ntBASIC3.67□□□□□ -1.82
USP41Q3LFD5 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.67□□□□□ -1.82
USP41Q3LFD5 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
USP41Q3LFD5 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
USP41Q3LFD5 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
USP41Q3LFD5 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
USP41Q3LFD5 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.66□□□□□ -1.82
USP41Q3LFD5 AC006504.1-201ENST00000562493 3666 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 Z83843.1-201ENST00000604070 3685 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
USP41Q3LFD5 MTCO1P9-201ENST00000505577 1534 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
USP41Q3LFD5 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
USP41Q3LFD5 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
USP41Q3LFD5 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
USP41Q3LFD5 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
USP41Q3LFD5 RNU6-1074P-201ENST00000383995 104 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 MIR607-201ENST00000385241 96 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 NDUFB4P4-201ENST00000404822 243 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 CCNG1P1-201ENST00000406783 885 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 RPS7P13-201ENST00000413955 498 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 MTCO2P34-201ENST00000421994 607 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.66□□□□□ -1.82
USP41Q3LFD5 OR4K11P-201ENST00000431829 904 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.66□□□□□ -1.82
USP41Q3LFD5 ST13P20-201ENST00000447996 1065 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.66□□□□□ -1.82
USP41Q3LFD5 RPS29P2-201ENST00000479278 136 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 RPL31P13-201ENST00000484151 370 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 AC112204.1-201ENST00000502591 103 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
USP41Q3LFD5 AP000873.5-201ENST00000533906 236 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.66□□□□□ -1.82
USP41Q3LFD5 AC135279.1-201ENST00000543493 504 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 SETP2-201ENST00000553886 926 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.66□□□□□ -1.82
USP41Q3LFD5 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.66□□□□□ -1.82
USP41Q3LFD5 RPL21P12-201ENST00000559810 515 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 UBE2L4-201ENST00000587688 464 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.66□□□□□ -1.82
USP41Q3LFD5 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.66□□□□□ -1.82
USP41Q3LFD5 OR10AB1P-201ENST00000609613 938 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 AC012531.5-201ENST00000611375 151 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.66□□□□□ -1.82
USP41Q3LFD5 AL158801.5-201ENST00000623123 465 ntBASIC3.66□□□□□ -1.82
USP41Q3LFD5 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
USP41Q3LFD5 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.66□□□□□ -1.82
USP41Q3LFD5 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
USP41Q3LFD5 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.66□□□□□ -1.82
USP41Q3LFD5 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.66□□□□□ -1.82
USP41Q3LFD5 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC3.65□□□□□ -1.82
USP41Q3LFD5 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
USP41Q3LFD5 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
USP41Q3LFD5 Y_RNA.46-201ENST00000362695 102 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 RNU6-1155P-201ENST00000363554 107 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 RNU6-1078P-201ENST00000364522 103 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 RNU4-91P-201ENST00000364778 135 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
USP41Q3LFD5 RPS20P2-201ENST00000402520 389 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.65□□□□□ -1.83
USP41Q3LFD5 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 136 ms