Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC010486.3-201ENST00000511602 785 ntBASIC3.96□□□□□ -1.78
CTCFP49711 AC091826.1-201ENST00000514065 313 ntBASIC3.96□□□□□ -1.78
CTCFP49711 MTCO1P47-201ENST00000523889 1271 ntBASIC3.96□□□□□ -1.78
CTCFP49711 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC3.96□□□□□ -1.78
CTCFP49711 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.96□□□□□ -1.78
CTCFP49711 AC090615.1-201ENST00000577519 154 ntBASIC3.96□□□□□ -1.78
CTCFP49711 XIAPP1-201ENST00000603162 600 ntBASIC3.96□□□□□ -1.78
CTCFP49711 AC128687.1-201ENST00000605304 619 ntBASIC3.96□□□□□ -1.78
CTCFP49711 AL592295.2-201ENST00000612578 206 ntBASIC3.96□□□□□ -1.78
CTCFP49711 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC3.96□□□□□ -1.78
CTCFP49711 XIST_intron.1-201ENST00000619444 68 ntBASIC3.96□□□□□ -1.78
CTCFP49711 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
CTCFP49711 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.96□□□□□ -1.78
CTCFP49711 AF246928.1-201ENST00000623768 87 ntBASIC3.96□□□□□ -1.78
CTCFP49711 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.96□□□□□ -1.78
CTCFP49711 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CTCFP49711 MTND4P16-201ENST00000466108 1367 ntBASIC3.96□□□□□ -1.78
CTCFP49711 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
CTCFP49711 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CTCFP49711 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CTCFP49711 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
CTCFP49711 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.78
CTCFP49711 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.95□□□□□ -1.78
CTCFP49711 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CTCFP49711 AL672167.1-206ENST00000356293 943 ntBASIC3.95□□□□□ -1.78
CTCFP49711 RNU6-744P-201ENST00000365557 107 ntBASIC3.95□□□□□ -1.78
CTCFP49711 RNU6-1316P-201ENST00000384242 108 ntBASIC3.95□□□□□ -1.78
CTCFP49711 Y_RNA.548-201ENST00000384656 105 ntBASIC3.95□□□□□ -1.78
CTCFP49711 Y_RNA.560-201ENST00000384689 102 ntBASIC3.95□□□□□ -1.78
CTCFP49711 AL031577.2-201ENST00000404133 280 ntBASIC3.95□□□□□ -1.78
CTCFP49711 MIR320C1-201ENST00000408566 88 ntBASIC3.95□□□□□ -1.78
CTCFP49711 RAD23BP2-201ENST00000416003 1207 ntBASIC3.95□□□□□ -1.78
CTCFP49711 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.95□□□□□ -1.78
CTCFP49711 RPL21P66-201ENST00000426566 466 ntBASIC3.95□□□□□ -1.78
CTCFP49711 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.95□□□□□ -1.78
CTCFP49711 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
CTCFP49711 PAXBP1P1-201ENST00000449315 447 ntBASIC3.95□□□□□ -1.78
CTCFP49711 HMGB3P8-201ENST00000449709 577 ntBASIC3.95□□□□□ -1.78
CTCFP49711 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC3.95□□□□□ -1.78
CTCFP49711 RPL23AP14-201ENST00000468281 468 ntBASIC3.95□□□□□ -1.78
CTCFP49711 SETP11-201ENST00000473027 690 ntBASIC3.95□□□□□ -1.78
CTCFP49711 AC104563.1-201ENST00000476147 376 ntBASIC3.95□□□□□ -1.78
CTCFP49711 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC3.95□□□□□ -1.78
CTCFP49711 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.95□□□□□ -1.78
CTCFP49711 AC034159.1-201ENST00000513885 583 ntBASIC3.95□□□□□ -1.78
CTCFP49711 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.95□□□□□ -1.78
CTCFP49711 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.95□□□□□ -1.78
CTCFP49711 AC018630.1-201ENST00000541376 925 ntBASIC3.95□□□□□ -1.78
CTCFP49711 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.95□□□□□ -1.78
CTCFP49711 AKIRIN1P1-201ENST00000547384 544 ntBASIC3.95□□□□□ -1.78
CTCFP49711 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.95□□□□□ -1.78
CTCFP49711 ELOCP29-201ENST00000588193 334 ntBASIC3.95□□□□□ -1.78
CTCFP49711 WISP1-OT1-201ENST00000602893 642 ntBASIC3.95□□□□□ -1.78
CTCFP49711 AC121247.2-201ENST00000604776 136 ntBASIC3.95□□□□□ -1.78
CTCFP49711 AC097468.3-201ENST00000607956 456 ntBASIC3.95□□□□□ -1.78
CTCFP49711 AC106028.5-201ENST00000610332 395 ntBASIC3.95□□□□□ -1.78
CTCFP49711 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.95□□□□□ -1.78
CTCFP49711 AC092628.2-201ENST00000622492 339 ntBASIC3.95□□□□□ -1.78
CTCFP49711 MIR3974-201ENST00000637126 96 ntBASIC3.95□□□□□ -1.78
CTCFP49711 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.95□□□□□ -1.78
CTCFP49711 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.95□□□□□ -1.78
CTCFP49711 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CTCFP49711 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.94□□□□□ -1.78
CTCFP49711 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
CTCFP49711 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.94□□□□□ -1.78
CTCFP49711 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
CTCFP49711 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.94□□□□□ -1.78
CTCFP49711 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CTCFP49711 AC138915.3-201ENST00000562908 1389 ntBASIC3.94□□□□□ -1.78
CTCFP49711 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.94□□□□□ -1.78
CTCFP49711 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.94□□□□□ -1.78
CTCFP49711 RNU6-920P-201ENST00000410926 92 ntBASIC3.94□□□□□ -1.78
CTCFP49711 AL445669.1-201ENST00000426743 755 ntBASIC3.94□□□□□ -1.78
CTCFP49711 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.94□□□□□ -1.78
CTCFP49711 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.94□□□□□ -1.78
CTCFP49711 MTND4LP10-201ENST00000435146 291 ntBASIC3.94□□□□□ -1.78
CTCFP49711 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.94□□□□□ -1.78
CTCFP49711 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.94□□□□□ -1.78
CTCFP49711 Z82190.1-201ENST00000454534 490 ntBASIC3.94□□□□□ -1.78
CTCFP49711 MTND3P7-201ENST00000474435 343 ntBASIC3.94□□□□□ -1.78
CTCFP49711 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CTCFP49711 RNU1-41P-201ENST00000516161 162 ntBASIC3.94□□□□□ -1.78
CTCFP49711 RNU1-48P-201ENST00000516400 162 ntBASIC3.94□□□□□ -1.78
CTCFP49711 RN7SKP244-201ENST00000516513 307 ntBASIC3.94□□□□□ -1.78
CTCFP49711 RNU6-714P-201ENST00000516963 103 ntBASIC3.94□□□□□ -1.78
CTCFP49711 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.94□□□□□ -1.78
CTCFP49711 SUMO2P20-201ENST00000520803 283 ntBASIC3.94□□□□□ -1.78
CTCFP49711 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.94□□□□□ -1.78
CTCFP49711 PSMA2P1-201ENST00000526365 646 ntBASIC3.94□□□□□ -1.78
CTCFP49711 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC3.94□□□□□ -1.78
CTCFP49711 AC126177.3-201ENST00000551839 688 ntBASIC3.94□□□□□ -1.78
CTCFP49711 H3F3AP1-201ENST00000559984 334 ntBASIC3.94□□□□□ -1.78
CTCFP49711 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.94□□□□□ -1.78
CTCFP49711 AC012435.1-202ENST00000568772 240 ntBASIC3.94□□□□□ -1.78
CTCFP49711 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.94□□□□□ -1.78
CTCFP49711 MIR3915-201ENST00000578518 97 ntBASIC3.94□□□□□ -1.78
CTCFP49711 AP001004.1-201ENST00000582468 324 ntBASIC3.94□□□□□ -1.78
CTCFP49711 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.94□□□□□ -1.78
CTCFP49711 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.94□□□□□ -1.78
CTCFP49711 Z99497.2-201ENST00000603634 310 ntBASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms