Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 AL078621.3-201ENST00000623707 2042 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 Y_RNA.54-201ENST00000362766 105 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 RNY1P16-201ENST00000363063 111 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 RN7SKP15-201ENST00000364742 309 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 RNU6-1329P-201ENST00000365664 107 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 RNU6-886P-201ENST00000384319 105 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 RNU6-45P-201ENST00000384471 107 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 Y_RNA.526-201ENST00000384572 110 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 MIR135A2-201ENST00000384854 100 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 MORN2-203ENST00000409131 544 ntTSL 5 BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 RNU6-121P-201ENST00000410525 99 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 RNU2-71P-201ENST00000411395 189 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 OR2AT2P-201ENST00000413438 905 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 EIF4A1P7-201ENST00000421800 1220 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 RPS27AP12-201ENST00000429552 465 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 TPT1P13-201ENST00000449760 499 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 RNU7-138P-201ENST00000459479 64 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 AC091180.1-201ENST00000462104 372 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 RPL37P6-202ENST00000464216 403 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 RPS24P16-201ENST00000497294 392 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 RNU7-4P-201ENST00000516961 62 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 AC012339.2-201ENST00000523996 453 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 AL713866.2-201ENST00000603579 219 ntBASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
HIF3AQ9Y2N7 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 AC092747.4-201ENST00000620519 1861 ntBASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 RN7SKP115-201ENST00000363177 317 ntBASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 Y_RNA.291-201ENST00000364886 113 ntBASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 RNA5SP178-201ENST00000410380 128 ntBASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 C4BPAP2-201ENST00000428434 478 ntBASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 AC006946.1-201ENST00000429106 328 ntBASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 RPL23AP25-201ENST00000430973 463 ntBASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 RPL19P16-201ENST00000433839 588 ntBASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 AC004866.2-201ENST00000438285 481 ntBASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 AC026784.1-201ENST00000507986 352 ntBASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 Y_RNA.687-201ENST00000516558 91 ntBASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 FTH1P11-201ENST00000517577 551 ntBASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 AL049872.1-201ENST00000556323 322 ntBASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 RN7SL356P-201ENST00000582228 248 ntBASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 MIR4273-201ENST00000582824 84 ntBASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 RPS29P30-201ENST00000600975 111 ntBASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 RNU6-85P-201ENST00000605989 107 ntBASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 AC109583.2-201ENST00000617367 129 ntBASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 CCL14-204ENST00000622526 472 ntTSL 3 BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 CU639417.4-201ENST00000623928 207 ntBASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 MIR4275-201ENST00000636486 87 ntBASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 RMST-209ENST00000639542 3269 ntTSL 5 BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 FAM91A3P-201ENST00000456826 2544 ntBASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
HIF3AQ9Y2N7 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HIF3AQ9Y2N7 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms