Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC5.51□□□□□ -1.53
TRAIPQ9BWF2 AL352979.3-201ENST00000553515 247 ntBASIC5.51□□□□□ -1.53
TRAIPQ9BWF2 AL157871.3-201ENST00000557231 293 ntBASIC5.51□□□□□ -1.53
TRAIPQ9BWF2 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC5.51□□□□□ -1.53
TRAIPQ9BWF2 RPS3AP23-202ENST00000574601 686 ntBASIC5.51□□□□□ -1.53
TRAIPQ9BWF2 AC022884.2-201ENST00000578535 580 ntBASIC5.51□□□□□ -1.53
TRAIPQ9BWF2 MIR4472-2-201ENST00000582069 67 ntBASIC5.51□□□□□ -1.53
TRAIPQ9BWF2 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.51□□□□□ -1.53
TRAIPQ9BWF2 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC5.51□□□□□ -1.53
TRAIPQ9BWF2 AC007546.1-201ENST00000619452 559 ntBASIC5.51□□□□□ -1.53
TRAIPQ9BWF2 ALG13-230ENST00000623189 458 ntTSL 3 BASIC5.51□□□□□ -1.53
TRAIPQ9BWF2 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
TRAIPQ9BWF2 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.51□□□□□ -1.53
TRAIPQ9BWF2 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.51□□□□□ -1.53
TRAIPQ9BWF2 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
TRAIPQ9BWF2 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
TRAIPQ9BWF2 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.51□□□□□ -1.53
TRAIPQ9BWF2 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 AC008079.2-201ENST00000623543 20396 ntBASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 Y_RNA.33-201ENST00000362591 102 ntBASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 RNA5-8SP7-201ENST00000363443 155 ntBASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 RNU2-37P-201ENST00000410695 177 ntBASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 RNU6-1148P-201ENST00000410992 104 ntBASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 Y_RNA.625-201ENST00000411256 107 ntBASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 AC007390.1-201ENST00000415722 356 ntBASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 RPLP0P7-201ENST00000416050 667 ntBASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 TEX41-205ENST00000431734 529 ntTSL 4 BASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 Z82210.1-201ENST00000440037 231 ntBASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 RPS29P9-201ENST00000440360 171 ntBASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 RPL21P93-201ENST00000480465 489 ntBASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 RN7SL441P-201ENST00000492388 296 ntBASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 AP002812.1-201ENST00000495378 474 ntBASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 RNU1-61P-201ENST00000516107 151 ntBASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 AC090136.1-201ENST00000520009 240 ntBASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 APAF1-207ENST00000547743 651 ntTSL 3 BASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 AC012119.1-201ENST00000603184 222 ntBASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 AC009233.1-201ENST00000616477 371 ntBASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 SDAD1P1-202ENST00000524156 2051 ntBASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
TRAIPQ9BWF2 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 RNU4-73P-201ENST00000363164 141 ntBASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 SNORA2.3-201ENST00000383920 135 ntBASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 AL590139.1-201ENST00000416267 400 ntBASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 TRAPPC2P4-201ENST00000421750 331 ntBASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 AL669831.1-202ENST00000428504 417 ntBASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 GTF2IP13-201ENST00000438487 386 ntBASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 AC112498.1-201ENST00000444401 332 ntBASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 AL513533.1-201ENST00000453728 415 ntBASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 RN7SL319P-201ENST00000480656 221 ntBASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 IGLV2-34-201ENST00000490007 283 ntBASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 AC112206.3-201ENST00000514578 389 ntBASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 AC069113.1-201ENST00000517763 267 ntBASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 AC105029.1-201ENST00000520250 669 ntBASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 CYCSP27-201ENST00000527643 293 ntBASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 AC135001.1-201ENST00000544546 283 ntBASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 CTHRC1P1-201ENST00000605383 469 ntBASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 SNORD39.4-201ENST00000620099 78 ntBASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.49□□□□□ -1.53
TRAIPQ9BWF2 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
TRAIPQ9BWF2 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
TRAIPQ9BWF2 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC5.48□□□□□ -1.53
TRAIPQ9BWF2 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.48□□□□□ -1.53
TRAIPQ9BWF2 MDM4-202ENST00000367180 547 ntTSL 3 BASIC5.48□□□□□ -1.53
TRAIPQ9BWF2 RNU6-1179P-201ENST00000384667 107 ntBASIC5.48□□□□□ -1.53
TRAIPQ9BWF2 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
TRAIPQ9BWF2 HSPE1P26-201ENST00000405341 275 ntBASIC5.48□□□□□ -1.53
TRAIPQ9BWF2 SNORA77-201ENST00000408716 125 ntBASIC5.48□□□□□ -1.53
TRAIPQ9BWF2 AL158156.1-201ENST00000422509 473 ntBASIC5.48□□□□□ -1.53
TRAIPQ9BWF2 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC5.48□□□□□ -1.53
TRAIPQ9BWF2 RPL23AP69-201ENST00000431134 458 ntBASIC5.48□□□□□ -1.53
TRAIPQ9BWF2 NDUFB4P6-201ENST00000436819 366 ntBASIC5.48□□□□□ -1.53
TRAIPQ9BWF2 HMGB1P18-201ENST00000438801 619 ntBASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms