Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.94□□□□□ -1.78
HERPUD2Q9BSE4 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HERPUD2Q9BSE4 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HERPUD2Q9BSE4 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
HERPUD2Q9BSE4 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 MIR325-201ENST00000385260 98 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AC019097.1-201ENST00000424783 735 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 TRIM60P10Y-201ENST00000425589 751 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AC007919.1-201ENST00000429380 217 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AC119618.1-201ENST00000434191 222 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 TRIM60P8Y-201ENST00000436338 762 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 HIGD1AP11-201ENST00000438361 280 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 MTND2P4-201ENST00000445034 1004 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 NANOGP10-201ENST00000453325 895 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 DNAJC19P1-201ENST00000455312 319 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 RNA5SP269-201ENST00000459032 137 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AC007537.2-201ENST00000472093 511 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 SNORA31.1-201ENST00000515993 133 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 SNORA31.5-201ENST00000516190 133 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AC022695.1-201ENST00000522089 237 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 RPL21P5-201ENST00000554662 472 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 MIR3609-201ENST00000582661 80 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 MIR4293-201ENST00000584305 78 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AC244505.7-201ENST00000599675 272 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AL031985.2-201ENST00000600955 480 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AL592436.1-201ENST00000605135 558 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AL109618.2-201ENST00000605527 211 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AC239868.4-201ENST00000608318 671 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AC006338.1-201ENST00000618453 749 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 FRG1KP-201ENST00000623592 341 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 OR5H6-203ENST00000642105 978 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 AC007785.2-201ENST00000598627 1916 ntBASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.93□□□□□ -1.78
HERPUD2Q9BSE4 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 OR1S2-201ENST00000302592 978 ntBASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 RNU4-91P-201ENST00000364778 135 ntBASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 RNU6-741P-201ENST00000383889 107 ntBASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 RNU6-213P-201ENST00000384051 104 ntBASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 SNORD116-2-201ENST00000384274 95 ntBASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 SNORD116-6-201ENST00000384711 96 ntBASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 AL359634.1-202ENST00000404721 284 ntBASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 MIR1302-8-201ENST00000408342 128 ntBASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 SLC44A3-AS1-205ENST00000424505 612 ntBASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 AL512844.2-201ENST00000433990 593 ntBASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 RNU6-420P-201ENST00000458780 107 ntBASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 ACTR3P3-201ENST00000480448 893 ntBASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 AC091965.2-201ENST00000512324 613 ntBASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 MTND5P13-201ENST00000513046 1079 ntBASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 RNU6-1282P-201ENST00000516735 96 ntBASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 PAICSP4-201ENST00000517543 1253 ntBASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 AP003467.2-201ENST00000520175 319 ntBASIC3.92□□□□□ -1.78
HERPUD2Q9BSE4 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 178.2 ms