Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL136116.1-201ENST00000403591 381 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 AL365184.2-201ENST00000431139 435 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 VDAC1P3-201ENST00000434069 851 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 RPL37P21-201ENST00000435890 276 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 AL662791.1-201ENST00000441992 928 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 AL121871.1-201ENST00000443413 436 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 Z75741.1-201ENST00000446793 314 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 OR6K1P-201ENST00000456766 971 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 AP1S2P1-201ENST00000457344 379 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 SNORA59A-201ENST00000459326 152 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 AC010285.1-201ENST00000470580 392 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 RNU6-528P-201ENST00000516926 100 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 RN7SKP289-201ENST00000517244 295 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 MIR3186-201ENST00000577404 85 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 AC008507.1-201ENST00000587506 734 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 BNIP3P23-201ENST00000599655 511 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 CKS1BP3-201ENST00000600888 237 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 AC105129.3-201ENST00000605455 485 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 TUG1_1.1-201ENST00000610654 145 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 AL360181.4-201ENST00000621752 134 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 AC008443.7-201ENST00000622195 246 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 AC091965.5-201ENST00000624785 342 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 AL356274.2-201ENST00000624379 3752 ntBASIC3.28□□□□□ -1.88
CCDC3Q9BQI4 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.28□□□□□ -1.89
CCDC3Q9BQI4 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.89
CCDC3Q9BQI4 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AL353743.1-202ENST00000431724 1695 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 FRG1BP-201ENST00000278882 761 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 Y_RNA.97-201ENST00000363094 102 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 RNA5SP197-201ENST00000363357 119 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 Y_RNA.560-201ENST00000384689 102 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 U3.20-201ENST00000390909 217 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 TPMTP3-201ENST00000411928 735 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 CCDC58P2-201ENST00000417131 366 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 UBE2V1P13-201ENST00000436983 439 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 LARP1BP3-201ENST00000437229 869 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 MTND1P30-201ENST00000441241 901 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AC112653.1-201ENST00000443851 386 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 BMI1P1-201ENST00000445879 941 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AL671855.1-201ENST00000446875 1203 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 HMGN2P16-201ENST00000456802 261 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 VN1R17P-201ENST00000472048 1090 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AL024509.2-201ENST00000493462 493 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 RNU6-1003P-201ENST00000517099 105 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 SYF2P1-201ENST00000550658 413 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AC022146.1-201ENST00000595307 847 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AC011468.4-201ENST00000603942 409 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AL162713.1-201ENST00000604480 262 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AC012360.2-201ENST00000609349 391 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AC006023.2-201ENST00000609916 167 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AL590099.1-201ENST00000615276 138 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AC022149.2-201ENST00000621061 203 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AC079597.1-201ENST00000624306 508 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 AC092192.1-201ENST00000633154 1018 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 MTND5P33-201ENST00000571250 1450 ntBASIC3.27□□□□□ -1.89
CCDC3Q9BQI4 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 184.1 ms