Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.97□□□□□ -1.93
VPS35Q96QK1 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
VPS35Q96QK1 AC008568.2-201ENST00000623862 2313 ntBASIC2.97□□□□□ -1.93
VPS35Q96QK1 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
VPS35Q96QK1 AC099786.3-201ENST00000565735 1410 ntBASIC2.96□□□□□ -1.94
VPS35Q96QK1 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.96□□□□□ -1.94
VPS35Q96QK1 AC000403.1-201ENST00000613696 3585 ntBASIC2.96□□□□□ -1.94
VPS35Q96QK1 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC2.96□□□□□ -1.94
VPS35Q96QK1 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC2.96□□□□□ -1.94
VPS35Q96QK1 AL513175.2-201ENST00000422071 443 ntBASIC2.96□□□□□ -1.94
VPS35Q96QK1 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS35Q96QK1 CYCSP32-201ENST00000440548 321 ntBASIC2.96□□□□□ -1.94
VPS35Q96QK1 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.96□□□□□ -1.94
VPS35Q96QK1 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS35Q96QK1 RPL31P60-201ENST00000478450 367 ntBASIC2.96□□□□□ -1.94
VPS35Q96QK1 AC134050.1-201ENST00000495088 933 ntBASIC2.96□□□□□ -1.94
VPS35Q96QK1 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS35Q96QK1 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.96□□□□□ -1.94
VPS35Q96QK1 AC026801.2-201ENST00000515352 425 ntBASIC2.96□□□□□ -1.94
VPS35Q96QK1 RNU6-714P-201ENST00000516963 103 ntBASIC2.96□□□□□ -1.94
VPS35Q96QK1 AC009812.2-201ENST00000517657 457 ntBASIC2.96□□□□□ -1.94
VPS35Q96QK1 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS35Q96QK1 COX6CP8-201ENST00000522620 226 ntBASIC2.96□□□□□ -1.94
VPS35Q96QK1 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
VPS35Q96QK1 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC2.96□□□□□ -1.94
VPS35Q96QK1 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.96□□□□□ -1.94
VPS35Q96QK1 AC107016.2-201ENST00000547968 190 ntBASIC2.96□□□□□ -1.94
VPS35Q96QK1 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.96□□□□□ -1.94
VPS35Q96QK1 ARL1-211ENST00000551828 776 ntTSL 5 BASIC2.96□□□□□ -1.94
VPS35Q96QK1 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC2.96□□□□□ -1.94
VPS35Q96QK1 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS35Q96QK1 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.96□□□□□ -1.94
VPS35Q96QK1 AP001429.1-201ENST00000602568 530 ntBASIC2.96□□□□□ -1.94
VPS35Q96QK1 AC011451.2-201ENST00000604303 598 ntBASIC2.96□□□□□ -1.94
VPS35Q96QK1 AC106791.2-201ENST00000604680 391 ntBASIC2.96□□□□□ -1.94
VPS35Q96QK1 RNU4-5P-201ENST00000607255 135 ntBASIC2.96□□□□□ -1.94
VPS35Q96QK1 AC007318.2-201ENST00000620999 243 ntBASIC2.96□□□□□ -1.94
VPS35Q96QK1 AC002550.2-201ENST00000621246 394 ntBASIC2.96□□□□□ -1.94
VPS35Q96QK1 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.96□□□□□ -1.94
VPS35Q96QK1 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
VPS35Q96QK1 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.96□□□□□ -1.94
VPS35Q96QK1 AC012321.1-201ENST00000561622 1588 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 MTCO1P9-201ENST00000505577 1534 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 AC096644.4-201ENST00000563417 2912 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 MIR483-201ENST00000385070 76 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 RNA5SP252-201ENST00000391131 119 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 AL953862.1-201ENST00000423016 168 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 AC092648.1-201ENST00000425870 423 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 HSFY7P-201ENST00000432672 318 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 AC090774.1-201ENST00000435925 246 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 HSFY8P-201ENST00000437934 318 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC2.95□□□□□ -1.94
VPS35Q96QK1 RPL23AP20-201ENST00000447965 421 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 HSFY5P-201ENST00000453726 309 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.95□□□□□ -1.94
VPS35Q96QK1 RN7SL633P-201ENST00000488974 297 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 AC116353.3-201ENST00000511215 249 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC2.95□□□□□ -1.94
VPS35Q96QK1 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC2.95□□□□□ -1.94
VPS35Q96QK1 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC2.95□□□□□ -1.94
VPS35Q96QK1 AC125611.2-201ENST00000551907 647 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 AC009712.1-201ENST00000564938 316 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS35Q96QK1 HSPE1P7-201ENST00000604681 321 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 AC093732.2-201ENST00000607950 274 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 AC245297.2-201ENST00000610119 565 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 AC069234.5-201ENST00000611056 416 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 AL359198.2-201ENST00000611836 194 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 MIR6130-201ENST00000619419 109 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.95□□□□□ -1.94
VPS35Q96QK1 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
VPS35Q96QK1 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.94□□□□□ -1.94
VPS35Q96QK1 RNU5A-1-201ENST00000362698 116 ntBASIC2.94□□□□□ -1.94
VPS35Q96QK1 RNU6-76P-201ENST00000384060 104 ntBASIC2.94□□□□□ -1.94
VPS35Q96QK1 RNU6-851P-201ENST00000384565 107 ntBASIC2.94□□□□□ -1.94
VPS35Q96QK1 RNU6-1197P-201ENST00000391183 107 ntBASIC2.94□□□□□ -1.94
VPS35Q96QK1 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.94□□□□□ -1.94
VPS35Q96QK1 MIR1290-201ENST00000408735 78 ntBASIC2.94□□□□□ -1.94
VPS35Q96QK1 RPL7P8-201ENST00000411964 730 ntBASIC2.94□□□□□ -1.94
VPS35Q96QK1 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS35Q96QK1 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS35Q96QK1 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS35Q96QK1 MTND5P14-201ENST00000441481 1267 ntBASIC2.94□□□□□ -1.94
VPS35Q96QK1 RPL39P40-201ENST00000445481 146 ntBASIC2.94□□□□□ -1.94
VPS35Q96QK1 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS35Q96QK1 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC2.94□□□□□ -1.94
VPS35Q96QK1 UBE2V1P12-201ENST00000503954 474 ntBASIC2.94□□□□□ -1.94
VPS35Q96QK1 AC021146.8-201ENST00000507455 733 ntBASIC2.94□□□□□ -1.94
VPS35Q96QK1 RN7SKP43-201ENST00000516173 320 ntBASIC2.94□□□□□ -1.94
VPS35Q96QK1 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC2.94□□□□□ -1.94
VPS35Q96QK1 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS35Q96QK1 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC2.94□□□□□ -1.94
VPS35Q96QK1 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS35Q96QK1 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.94□□□□□ -1.94
VPS35Q96QK1 AC006270.3-201ENST00000605967 1036 ntBASIC2.94□□□□□ -1.94
VPS35Q96QK1 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC2.94□□□□□ -1.94
VPS35Q96QK1 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC2.94□□□□□ -1.94
VPS35Q96QK1 AC008443.7-201ENST00000622195 246 ntBASIC2.94□□□□□ -1.94
VPS35Q96QK1 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC2.94□□□□□ -1.94
VPS35Q96QK1 AC027309.3-201ENST00000623419 351 ntBASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 125.5 ms