Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.37□□□□□ -1.71
HPS3Q969F9 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
HPS3Q969F9 AL157700.1-201ENST00000561973 1432 ntBASIC4.37□□□□□ -1.71
HPS3Q969F9 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
HPS3Q969F9 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
HPS3Q969F9 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC4.36□□□□□ -1.71
HPS3Q969F9 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HPS3Q969F9 RPS3AP24-201ENST00000407896 734 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 MIR1251-201ENST00000408552 70 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 RPL7AP73-201ENST00000413490 353 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 AC083863.1-201ENST00000438811 231 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 HMGB1P37-201ENST00000439613 609 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 AL359073.1-201ENST00000448036 403 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 NANOGP10-201ENST00000453325 895 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.36□□□□□ -1.71
HPS3Q969F9 AC078817.1-201ENST00000492623 435 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.36□□□□□ -1.71
HPS3Q969F9 VN1R104P-201ENST00000505115 1009 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 KLHL2P1-201ENST00000508691 521 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC4.36□□□□□ -1.71
HPS3Q969F9 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC4.36□□□□□ -1.71
HPS3Q969F9 SAP18P1-201ENST00000512058 390 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 FTH1P9-201ENST00000513251 355 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 RNU2-10P-201ENST00000516375 211 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 MTND4LP26-201ENST00000518144 282 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 AC087369.1-201ENST00000520775 996 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC4.36□□□□□ -1.71
HPS3Q969F9 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC4.36□□□□□ -1.71
HPS3Q969F9 AC022616.3-201ENST00000523940 148 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.36□□□□□ -1.71
HPS3Q969F9 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HPS3Q969F9 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.36□□□□□ -1.71
HPS3Q969F9 AC109635.4-202ENST00000531666 412 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC4.36□□□□□ -1.71
HPS3Q969F9 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.36□□□□□ -1.71
HPS3Q969F9 TPRKBP2-201ENST00000565969 475 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC4.36□□□□□ -1.71
HPS3Q969F9 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.36□□□□□ -1.71
HPS3Q969F9 AL590282.1-201ENST00000610379 1136 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 AL713922.2-201ENST00000619384 716 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 AC112484.5-201ENST00000624189 228 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 AC091905.1-201ENST00000624400 311 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 RNA5SP196-201ENST00000625967 102 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
HPS3Q969F9 AC005832.2-201ENST00000538921 1430 ntBASIC4.36□□□□□ -1.71
HPS3Q969F9 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.36□□□□□ -1.71
HPS3Q969F9 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HPS3Q969F9 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.36□□□□□ -1.71
HPS3Q969F9 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.36□□□□□ -1.71
HPS3Q969F9 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.36□□□□□ -1.71
HPS3Q969F9 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.36□□□□□ -1.71
HPS3Q969F9 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HPS3Q969F9 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HPS3Q969F9 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.35□□□□□ -1.71
HPS3Q969F9 SPRR2C-201ENST00000290702 219 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 Y_RNA.1-201ENST00000352915 104 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 RNU5E-8P-201ENST00000363502 116 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 SNORA7.2-201ENST00000364446 145 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 RNA5SP283-201ENST00000365604 119 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
HPS3Q969F9 MTCO3P40-201ENST00000392516 676 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 RPL17P50-201ENST00000396131 546 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.35□□□□□ -1.71
HPS3Q969F9 RNA5SP107-201ENST00000411358 122 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.35□□□□□ -1.71
HPS3Q969F9 AL117339.2-201ENST00000430475 180 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC4.35□□□□□ -1.71
HPS3Q969F9 MTCO2P11-201ENST00000431069 680 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 AC087650.1-201ENST00000431445 468 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 KCTD9P3-201ENST00000434597 1169 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HPS3Q969F9 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.35□□□□□ -1.71
HPS3Q969F9 AC090774.1-201ENST00000435925 246 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 AL162389.1-201ENST00000449233 177 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 AC140076.1-201ENST00000449897 361 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 snoU13.24-201ENST00000458998 104 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 AC079382.1-201ENST00000493346 557 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.35□□□□□ -1.71
HPS3Q969F9 AF213884.2-201ENST00000510417 903 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.35□□□□□ -1.71
HPS3Q969F9 RNU6-352P-201ENST00000516908 107 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 RNU6-64P-201ENST00000517119 105 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.35□□□□□ -1.71
HPS3Q969F9 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HPS3Q969F9 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.35□□□□□ -1.71
HPS3Q969F9 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC4.35□□□□□ -1.71
HPS3Q969F9 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC4.35□□□□□ -1.71
HPS3Q969F9 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.35□□□□□ -1.71
HPS3Q969F9 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.35□□□□□ -1.71
HPS3Q969F9 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
HPS3Q969F9 TUG1_2.1-201ENST00000614234 87 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 AL353748.2-201ENST00000622148 471 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 FRG1KP-201ENST00000623592 341 ntBASIC4.35□□□□□ -1.71
HPS3Q969F9 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
HPS3Q969F9 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.35□□□□□ -1.71
HPS3Q969F9 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
HPS3Q969F9 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HPS3Q969F9 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.35□□□□□ -1.71
HPS3Q969F9 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.35□□□□□ -1.71
HPS3Q969F9 AC018555.1-201ENST00000567548 1980 ntBASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms