Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 MIR6130-201ENST00000619419 109 ntBASIC5.37□□□□□ -1.55
USP48Q86UV5 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC5.37□□□□□ -1.55
USP48Q86UV5 LINC01355-201ENST00000566551 5444 ntBASIC5.37□□□□□ -1.55
USP48Q86UV5 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC5.37□□□□□ -1.55
USP48Q86UV5 AL391684.1-202ENST00000641293 1636 ntBASIC5.37□□□□□ -1.55
USP48Q86UV5 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5.37□□□□□ -1.55
USP48Q86UV5 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
USP48Q86UV5 PTER-201ENST00000298942 3448 ntTSL 5 BASIC5.36□□□□□ -1.55
USP48Q86UV5 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
USP48Q86UV5 NEAT1-202ENST00000501122 22743 ntBASIC5.36□□□□□ -1.55
USP48Q86UV5 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
USP48Q86UV5 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
USP48Q86UV5 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC5.36□□□□□ -1.55
USP48Q86UV5 5S_rRNA.1-201ENST00000364415 116 ntBASIC5.36□□□□□ -1.55
USP48Q86UV5 Y_RNA.356-201ENST00000365475 113 ntBASIC5.36□□□□□ -1.55
USP48Q86UV5 AL356057.2-201ENST00000403318 432 ntBASIC5.36□□□□□ -1.55
USP48Q86UV5 RPS20P15-201ENST00000412792 311 ntBASIC5.36□□□□□ -1.55
USP48Q86UV5 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC5.36□□□□□ -1.55
USP48Q86UV5 EIF4EP3-201ENST00000498782 656 ntBASIC5.36□□□□□ -1.55
USP48Q86UV5 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC5.36□□□□□ -1.55
USP48Q86UV5 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC5.36□□□□□ -1.55
USP48Q86UV5 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC5.36□□□□□ -1.55
USP48Q86UV5 IGLV3-26-201ENST00000520756 302 ntBASIC5.36□□□□□ -1.55
USP48Q86UV5 SUB1P1-201ENST00000524415 382 ntBASIC5.36□□□□□ -1.55
USP48Q86UV5 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC5.36□□□□□ -1.55
USP48Q86UV5 AC007424.1-203ENST00000554613 687 ntBASIC5.36□□□□□ -1.55
USP48Q86UV5 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC5.36□□□□□ -1.55
USP48Q86UV5 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC5.36□□□□□ -1.55
USP48Q86UV5 AC012669.1-201ENST00000603209 283 ntBASIC5.36□□□□□ -1.55
USP48Q86UV5 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.36□□□□□ -1.55
USP48Q86UV5 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
USP48Q86UV5 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
USP48Q86UV5 AC090229.1-201ENST00000590983 1609 ntBASIC5.36□□□□□ -1.55
USP48Q86UV5 DDX10P1-201ENST00000448545 1933 ntBASIC5.36□□□□□ -1.55
USP48Q86UV5 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
USP48Q86UV5 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USP48Q86UV5 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.35□□□□□ -1.55
USP48Q86UV5 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC5.35□□□□□ -1.55
USP48Q86UV5 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
USP48Q86UV5 OR4G1P-203ENST00000641984 1631 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC5.35□□□□□ -1.55
USP48Q86UV5 RNU6-1155P-201ENST00000363554 107 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 SNORA62.1-201ENST00000364287 154 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC5.35□□□□□ -1.55
USP48Q86UV5 SNORD37.1-201ENST00000390968 65 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC5.35□□□□□ -1.55
USP48Q86UV5 RNU6-712P-201ENST00000410558 100 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC5.35□□□□□ -1.55
USP48Q86UV5 UBE2FP1-201ENST00000416536 447 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 AL356095.1-201ENST00000417217 199 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC5.35□□□□□ -1.55
USP48Q86UV5 MTCYBP8-201ENST00000422855 651 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 RPL23AP43-201ENST00000446445 471 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC5.35□□□□□ -1.55
USP48Q86UV5 ISCUP1-201ENST00000454451 448 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 DHFRP3-201ENST00000455595 559 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC5.35□□□□□ -1.55
USP48Q86UV5 MRPS17P3-201ENST00000465453 385 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 RPS27AP1-201ENST00000475545 471 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 RNU4ATAC8P-201ENST00000516196 109 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 AC100870.1-201ENST00000522035 505 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC5.35□□□□□ -1.55
USP48Q86UV5 OR5B19P-201ENST00000531766 928 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC5.35□□□□□ -1.55
USP48Q86UV5 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC5.35□□□□□ -1.55
USP48Q86UV5 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC5.35□□□□□ -1.55
USP48Q86UV5 RN7SL600P-201ENST00000581811 299 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC5.35□□□□□ -1.55
USP48Q86UV5 AP001029.3-201ENST00000588063 596 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.35□□□□□ -1.55
USP48Q86UV5 AL442067.2-201ENST00000614033 363 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 MIR6875-201ENST00000617506 72 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 MIR8059-201ENST00000620427 81 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 AC079684.1-201ENST00000621405 437 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 AC019278.1-201ENST00000623516 479 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 AC100810.6-201ENST00000638068 285 ntBASIC5.35□□□□□ -1.55
USP48Q86UV5 ATM-228ENST00000639240 498 ntTSL 5 BASIC5.35□□□□□ -1.55
USP48Q86UV5 ATM-230ENST00000640388 578 ntTSL 5 BASIC5.35□□□□□ -1.55
USP48Q86UV5 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.35□□□□□ -1.55
USP48Q86UV5 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
USP48Q86UV5 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
USP48Q86UV5 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.35□□□□□ -1.55
USP48Q86UV5 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC5.35□□□□□ -1.55
USP48Q86UV5 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP48Q86UV5 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP48Q86UV5 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP48Q86UV5 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.34□□□□□ -1.55
USP48Q86UV5 AL158163.1-201ENST00000603915 1649 ntBASIC5.34□□□□□ -1.55
USP48Q86UV5 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP48Q86UV5 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP48Q86UV5 AL157700.1-201ENST00000561973 1432 ntBASIC5.34□□□□□ -1.55
USP48Q86UV5 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.34□□□□□ -1.55
USP48Q86UV5 AC004972.1-201ENST00000623934 2209 ntBASIC5.34□□□□□ -1.55
USP48Q86UV5 RNU6-1284P-201ENST00000363701 100 ntBASIC5.34□□□□□ -1.55
USP48Q86UV5 RNU5E-6P-201ENST00000365574 115 ntBASIC5.34□□□□□ -1.55
USP48Q86UV5 RNU6-332P-201ENST00000391193 108 ntBASIC5.34□□□□□ -1.55
USP48Q86UV5 RPL21P24-201ENST00000413752 448 ntBASIC5.34□□□□□ -1.55
USP48Q86UV5 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC5.34□□□□□ -1.55
USP48Q86UV5 RPS7P15-201ENST00000415804 584 ntBASIC5.34□□□□□ -1.55
USP48Q86UV5 AL139095.3-201ENST00000419672 1203 ntBASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms