Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 RNU6-1155P-201ENST00000363554 107 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 RNU6-266P-201ENST00000364225 107 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 RNU6-1026P-201ENST00000384465 108 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 MIR1252-201ENST00000408861 65 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 AC011933.1-201ENST00000413334 321 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 AC092447.6-201ENST00000414578 210 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 AL160275.3-201ENST00000423876 471 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 RPL7P2-201ENST00000427639 268 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 RPS29P9-201ENST00000440360 171 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 AL163193.1-201ENST00000444895 788 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 OSTCP8-201ENST00000445117 448 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 IGHV5-78-201ENST00000450948 295 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 AC008571.1-201ENST00000467232 300 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 AC093852.1-201ENST00000503587 266 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 ENPP7P11-201ENST00000505915 627 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 HIGD1AP3-201ENST00000515857 278 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 RNU6-390P-201ENST00000516259 103 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 RN7SKP258-201ENST00000517151 304 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 MIR5692A1-201ENST00000580523 69 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 MIR8062-201ENST00000621515 85 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 MTND5P7-201ENST00000413558 1798 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 AC063976.2-201ENST00000425667 3556 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 AC091812.1-201ENST00000432235 1948 ntBASIC4.8□□□□□ -1.64
UBE3DQ7Z6J8 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 Y_RNA.288-201ENST00000364854 92 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 RNU6-306P-201ENST00000384617 107 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 RNU6-178P-201ENST00000384631 104 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 RNU6-713P-201ENST00000384761 107 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 AC097374.1-203ENST00000400783 485 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 RPS4XP7-201ENST00000406274 780 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 RNU6ATAC23P-201ENST00000408448 123 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 AC096664.2-201ENST00000411843 406 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 DPPA2P3-201ENST00000411853 655 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 DDX39BP1-205ENST00000422507 192 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 AC073910.1-201ENST00000445047 438 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 AC002553.2-201ENST00000453217 340 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 RPS17P2-201ENST00000461663 408 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 RN7SL177P-201ENST00000476596 299 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 SNORA31.3-201ENST00000516029 96 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 RNU6-1095P-201ENST00000516148 108 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 SNORA40.14-201ENST00000516543 86 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 ERHP1-201ENST00000523006 310 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 AC006349.1-201ENST00000555526 235 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 IGHV3-29-201ENST00000604817 344 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 SNORD58B-201ENST00000607313 66 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 BX005214.3-202ENST00000619809 325 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 AL355480.1-201ENST00000629041 99 ntBASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.79□□□□□ -1.64
UBE3DQ7Z6J8 BTBD10P1-201ENST00000549824 1352 ntBASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 MIR323B-201ENST00000385269 82 ntBASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 MIR765-201ENST00000390226 114 ntBASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 AL139039.1-201ENST00000401900 692 ntBASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 DAP3P1-201ENST00000441522 278 ntBASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 213.8 ms