| HES3 | Q5TGS1 | AC133794.1-201 | ENST00000602731 | 914 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | GAS5-AS1-201 | ENST00000602767 | 694 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AC012669.1-201 | ENST00000603209 | 283 nt | BASIC | 2.25 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AC009951.2-201 | ENST00000634873 | 644 nt | TSL 5 BASIC | 2.25 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | PIK3CA-201 | ENST00000263967 | 9093 nt | APPRIS P1 TSL 2 BASIC | 2.25 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | ASPM-202 | ENST00000367408 | 3747 nt | TSL 1 (best) BASIC | 2.25 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | MLF1-203 | ENST00000392822 | 2157 nt | TSL 5 BASIC | 2.25 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | WWP1-201 | ENST00000265428 | 3362 nt | APPRIS P1 TSL 1 (best) BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AC092447.7-201 | ENST00000422212 | 1621 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | RAPGEF6-210 | ENST00000512052 | 3535 nt | TSL 2 BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AL513185.3-201 | ENST00000433335 | 1300 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | GRAMD1C-202 | ENST00000440446 | 3475 nt | TSL 1 (best) BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | VTRNA1-1-201 | ENST00000363120 | 99 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | RNU6-792P-201 | ENST00000363490 | 107 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | RNA5SP139-201 | ENST00000364340 | 117 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | ZBTB8OS-202 | ENST00000373501 | 598 nt | TSL 5 BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | KRTAP22-2-201 | ENST00000382830 | 293 nt | APPRIS P1 BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | RNU6-76P-201 | ENST00000384060 | 104 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AP002784.2-201 | ENST00000397300 | 549 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | RNU4-27P-201 | ENST00000410889 | 139 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AL365356.1-201 | ENST00000411512 | 736 nt | TSL 3 BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | TMEM167AP1-201 | ENST00000423409 | 219 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | RPL27AP8-201 | ENST00000424277 | 446 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | RPL31P54-201 | ENST00000429803 | 370 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | TCF7L1-IT1-201 | ENST00000433581 | 458 nt | TSL 3 BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | MTND4LP10-201 | ENST00000435146 | 291 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AC004866.2-201 | ENST00000438285 | 481 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | UBBP3-201 | ENST00000445497 | 241 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | TMEM247-203 | ENST00000449601 | 741 nt | TSL 1 (best) BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | MTND2P30-201 | ENST00000456663 | 382 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AGBL4-IT1-201 | ENST00000457061 | 514 nt | TSL 3 BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | ZBTB8OS-205 | ENST00000465588 | 548 nt | TSL 2 BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | TRBV1-201 | ENST00000476502 | 284 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AC068587.2-201 | ENST00000478386 | 781 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AC104090.1-201 | ENST00000506341 | 1171 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AC048346.1-201 | ENST00000510247 | 144 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | RNU6-1095P-201 | ENST00000516148 | 108 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | RNU6-826P-201 | ENST00000516827 | 104 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | RNA5SP135-201 | ENST00000517019 | 125 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | OR10V3P-201 | ENST00000525712 | 725 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | LINC02258-201 | ENST00000551280 | 777 nt | TSL 2 BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | LINC02410-201 | ENST00000553095 | 393 nt | TSL 2 BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | PSMA4-204 | ENST00000558094 | 651 nt | TSL 3 BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | NIFKP8-201 | ENST00000560500 | 874 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | SULT1C2P1-202 | ENST00000562418 | 459 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | MTCO3P13-201 | ENST00000577757 | 781 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AC124283.4-201 | ENST00000581815 | 456 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | LINC01905-202 | ENST00000588139 | 459 nt | TSL 3 BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AC100781.1-203 | ENST00000598549 | 399 nt | TSL 5 BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AP002906.1-201 | ENST00000603405 | 233 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AC106791.2-201 | ENST00000604680 | 391 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AL627309.6-201 | ENST00000606857 | 840 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | NEAT1-205 | ENST00000616315 | 483 nt | TSL 2 BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | CRYM-AS1-204 | ENST00000637983 | 556 nt | BASIC | 2.24 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | ANKRD18EP-201 | ENST00000405487 | 2632 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AC002543.1-201 | ENST00000299783 | 1954 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | CASC1-205 | ENST00000545133 | 2146 nt | APPRIS ALT2 TSL 2 BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | ZNF85-203 | ENST00000345030 | 1689 nt | APPRIS ALT2 TSL 5 BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | RNU6-251P-201 | ENST00000363235 | 104 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | SNORD51-201 | ENST00000384320 | 80 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | TRAV41-201 | ENST00000390468 | 336 nt | APPRIS P1 BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AL136372.1-201 | ENST00000403060 | 228 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AL162578.1-201 | ENST00000406202 | 378 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AL365184.1-201 | ENST00000413801 | 572 nt | TSL 3 BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AL096803.2-201 | ENST00000450032 | 677 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AL359385.1-201 | ENST00000456509 | 365 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | C1orf185-202 | ENST00000467127 | 747 nt | APPRIS ALT2 TSL 3 BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AC116337.1-201 | ENST00000509680 | 687 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AC004053.1-201 | ENST00000515127 | 575 nt | TSL 5 BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | ZDHHC20P3-201 | ENST00000531576 | 336 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | LINC02399-201 | ENST00000547094 | 400 nt | TSL 2 BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | SNRPGP18-201 | ENST00000553000 | 214 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | NBEAP1-201 | ENST00000554452 | 979 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AC090971.2-201 | ENST00000558142 | 510 nt | TSL 3 BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | MED28P6-201 | ENST00000558776 | 231 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AC093519.1-201 | ENST00000566109 | 298 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AC098850.3-201 | ENST00000577569 | 771 nt | TSL 3 BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | GLUD1P4-201 | ENST00000590914 | 418 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AL671309.1-201 | ENST00000603750 | 544 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | MACROD2-IT1-202 | ENST00000605675 | 575 nt | TSL 5 BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AC243585.2-201 | ENST00000619099 | 508 nt | TSL 3 BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AL512506.2-201 | ENST00000624472 | 458 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | MIR6733-201 | ENST00000635723 | 61 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | BX649567.1-201 | ENST00000642071 | 1134 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | ZNF849P-201 | ENST00000594711 | 1566 nt | BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | DEUP1-201 | ENST00000298050 | 2664 nt | APPRIS P1 TSL 5 BASIC | 2.23 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AL355596.1-201 | ENST00000565399 | 3996 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | NEB-203 | ENST00000397345 | 26202 nt | APPRIS ALT2 TSL 5 BASIC | 2.22 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | NEB-209 | ENST00000427231 | 26202 nt | APPRIS ALT2 TSL 5 BASIC | 2.22 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | AC011460.1-201 | ENST00000636268 | 1834 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | OR5T1-202 | ENST00000641665 | 1471 nt | APPRIS P1 BASIC | 2.22 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | OXR1-209 | ENST00000517566 | 4501 nt | TSL 1 (best) BASIC | 2.22 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | TTTY13-201 | ENST00000330337 | 659 nt | TSL 1 (best) BASIC | 2.22 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | MIR16-2-201 | ENST00000362117 | 81 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | KLRC2-202 | ENST00000381902 | 1221 nt | APPRIS P2 TSL 1 (best) BASIC | 2.22 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | RNU6-549P-201 | ENST00000384433 | 107 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | SNORA41-201 | ENST00000384675 | 132 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | RNA5SP252-201 | ENST00000391131 | 119 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | MTND3P20-201 | ENST00000407663 | 186 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| HES3 | Q5TGS1 | RN7SKP32-201 | ENST00000410167 | 303 nt | BASIC | 2.22 | □□□□□ -2.05 | | |