Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.3□□□□□ -2.04
CCDC88AQ3V6T2 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC88AQ3V6T2 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC2.3□□□□□ -2.04
CCDC88AQ3V6T2 CKAP2P1-201ENST00000555477 2049 ntBASIC2.3□□□□□ -2.04
CCDC88AQ3V6T2 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC2.3□□□□□ -2.04
CCDC88AQ3V6T2 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC2.3□□□□□ -2.04
CCDC88AQ3V6T2 AC109780.2-201ENST00000413467 845 ntBASIC2.3□□□□□ -2.04
CCDC88AQ3V6T2 RFESDP1-201ENST00000422350 461 ntBASIC2.3□□□□□ -2.04
CCDC88AQ3V6T2 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC88AQ3V6T2 AC055855.1-201ENST00000489563 579 ntBASIC2.3□□□□□ -2.04
CCDC88AQ3V6T2 ARL4AP2-201ENST00000507378 601 ntBASIC2.3□□□□□ -2.04
CCDC88AQ3V6T2 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC88AQ3V6T2 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.3□□□□□ -2.04
CCDC88AQ3V6T2 AC090751.1-201ENST00000566966 267 ntBASIC2.3□□□□□ -2.04
CCDC88AQ3V6T2 AC110792.4-201ENST00000609843 298 ntBASIC2.3□□□□□ -2.04
CCDC88AQ3V6T2 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 AC026241.1-201ENST00000517873 2142 ntBASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 RNU6-386P-201ENST00000362650 107 ntBASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 RNA5SP160-201ENST00000364866 120 ntBASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 RNA5SP37-201ENST00000365420 130 ntBASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 AP000275.1-201ENST00000411943 390 ntBASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 HMGB1P45-201ENST00000435986 653 ntBASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 AL109741.2-201ENST00000455561 343 ntBASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 AC104689.1-201ENST00000473356 768 ntBASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 FABP5P6-201ENST00000510588 409 ntBASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 EIF1AXP2-201ENST00000555940 413 ntBASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 AC023158.1-201ENST00000561632 1025 ntBASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 AC010546.1-201ENST00000569391 485 ntBASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 AC090616.5-202ENST00000582111 297 ntBASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 AC009032.1-201ENST00000617574 431 ntBASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 MAPK10-266ENST00000641066 6555 ntBASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
CCDC88AQ3V6T2 RNU6-244P-201ENST00000391028 104 ntBASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 MIR1250-201ENST00000408098 113 ntBASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 MTAPP1-201ENST00000489154 819 ntBASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 RNU1-61P-201ENST00000516107 151 ntBASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 HSPE1P20-201ENST00000538133 289 ntBASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 DNAJC8P1-201ENST00000554535 372 ntBASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 KATNBL1P1-201ENST00000605192 748 ntBASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 BX248123.2-201ENST00000606318 124 ntBASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 AC092954.1-201ENST00000609121 445 ntBASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 SNORD56.5-201ENST00000364281 72 ntBASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 OR51AB1P-201ENST00000429046 620 ntBASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 RPS7P2-201ENST00000435134 607 ntBASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 SUMO1P1-201ENST00000497904 306 ntBASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 AC011352.3-201ENST00000505162 593 ntBASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 AC124283.4-201ENST00000581815 456 ntBASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 AL121917.1-203ENST00000605534 577 ntBASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 AC020923.1-201ENST00000624021 917 ntBASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
CCDC88AQ3V6T2 ZNF37BP-203ENST00000452306 1352 ntBASIC2.28□□□□□ -2.05
CCDC88AQ3V6T2 MTND4P1-201ENST00000457501 1466 ntBASIC2.27□□□□□ -2.05
CCDC88AQ3V6T2 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.27□□□□□ -2.05
CCDC88AQ3V6T2 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
CCDC88AQ3V6T2 AGR3-202ENST00000402239 563 ntTSL 2 BASIC2.27□□□□□ -2.05
CCDC88AQ3V6T2 SFR1P1-201ENST00000403720 688 ntBASIC2.27□□□□□ -2.05
CCDC88AQ3V6T2 RNA5SP492-201ENST00000411330 114 ntBASIC2.27□□□□□ -2.05
CCDC88AQ3V6T2 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC88AQ3V6T2 AL590664.1-201ENST00000448065 339 ntBASIC2.27□□□□□ -2.05
CCDC88AQ3V6T2 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC2.27□□□□□ -2.05
CCDC88AQ3V6T2 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
CCDC88AQ3V6T2 RNA5SP182-201ENST00000516064 82 ntBASIC2.27□□□□□ -2.05
CCDC88AQ3V6T2 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.27□□□□□ -2.05
CCDC88AQ3V6T2 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC2.27□□□□□ -2.05
CCDC88AQ3V6T2 AC079610.2-201ENST00000604818 690 ntBASIC2.27□□□□□ -2.05
CCDC88AQ3V6T2 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC88AQ3V6T2 AP002907.1-201ENST00000606361 1430 ntBASIC2.27□□□□□ -2.05
CCDC88AQ3V6T2 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 SSXP9-201ENST00000417503 292 ntBASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 EIF1AXP1-201ENST00000419267 435 ntBASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 WARS2P1-201ENST00000429678 537 ntBASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 RPL17P49-201ENST00000443728 411 ntBASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 AC092685.1-201ENST00000447960 1243 ntBASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 AC025033.1-201ENST00000463883 194 ntBASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 BLNK-209ENST00000495266 440 ntTSL 5 BASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 RNU6-250P-201ENST00000516958 103 ntBASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 AL136520.1-201ENST00000600311 1322 ntBASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms