Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 MIR767-201ENST00000390228 109 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
CHD3Q12873 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
CHD3Q12873 NUP35P2-201ENST00000416748 943 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 AC096632.1-201ENST00000427395 310 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 AC234775.1-201ENST00000454247 670 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC1.79□□□□□ -2.12
CHD3Q12873 AC025459.1-201ENST00000504072 156 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 MTND3P24-201ENST00000506306 329 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 AC004062.1-201ENST00000509926 645 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 HMGB3P3-201ENST00000510526 400 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC1.79□□□□□ -2.12
CHD3Q12873 SCARNA16.3-201ENST00000516595 184 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC1.79□□□□□ -2.12
CHD3Q12873 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC1.79□□□□□ -2.12
CHD3Q12873 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.79□□□□□ -2.12
CHD3Q12873 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC1.79□□□□□ -2.12
CHD3Q12873 AC245036.5-201ENST00000596330 847 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 HMGB1P51-201ENST00000605166 638 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 MIR6864-201ENST00000617935 70 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 Z82195.2-201ENST00000612348 18351 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.79□□□□□ -2.12
CHD3Q12873 Y_RNA.116-201ENST00000363292 103 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC1.79□□□□□ -2.12
CHD3Q12873 RNU2-2P-201ENST00000410396 191 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 RNA5SP38-201ENST00000410750 119 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 MTCO3P4-201ENST00000419236 787 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
CHD3Q12873 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC1.79□□□□□ -2.12
CHD3Q12873 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC1.79□□□□□ -2.12
CHD3Q12873 AC097499.1-201ENST00000444277 208 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 AL627224.1-201ENST00000448334 444 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC1.79□□□□□ -2.12
CHD3Q12873 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC1.79□□□□□ -2.12
CHD3Q12873 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC1.79□□□□□ -2.12
CHD3Q12873 RPL23AP41-201ENST00000484754 458 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 AC113155.1-201ENST00000511141 769 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 SCARNA17.1-201ENST00000516211 143 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 SCARNA17.2-201ENST00000516334 143 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 RNU6-1004P-201ENST00000516584 111 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 AC090751.1-201ENST00000566966 267 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC1.79□□□□□ -2.12
CHD3Q12873 AC093673.2-201ENST00000609674 331 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 U2.15-201ENST00000611544 191 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 U2.16-201ENST00000613119 191 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 U2.12-201ENST00000613778 191 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 U2.20-201ENST00000613956 192 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC1.79□□□□□ -2.12
CHD3Q12873 SCARNA17.4-201ENST00000614296 143 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 U2.9-201ENST00000615427 191 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC1.79□□□□□ -2.12
CHD3Q12873 U2.11-201ENST00000616345 191 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 U2.2-201ENST00000616535 191 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 U2.3-201ENST00000617785 191 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 U2.19-201ENST00000618602 191 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 RNU2-1-201ENST00000618664 191 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 U2.6-201ENST00000619225 191 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 U2.5-201ENST00000619465 191 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
CHD3Q12873 U2.10-201ENST00000620268 191 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 AC110079.1-202ENST00000635213 138 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 MTND4P1-201ENST00000457501 1466 ntBASIC1.79□□□□□ -2.12
CHD3Q12873 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
CHD3Q12873 MIR337-201ENST00000362281 93 ntBASIC1.78□□□□□ -2.12
CHD3Q12873 RNU6-819P-201ENST00000364116 107 ntBASIC1.78□□□□□ -2.12
CHD3Q12873 HMGB3P2-201ENST00000411913 584 ntBASIC1.78□□□□□ -2.12
CHD3Q12873 AC234782.4-201ENST00000417646 1048 ntBASIC1.78□□□□□ -2.12
CHD3Q12873 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC1.78□□□□□ -2.12
CHD3Q12873 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC1.78□□□□□ -2.12
CHD3Q12873 RNU6-717P-201ENST00000459076 104 ntBASIC1.78□□□□□ -2.12
CHD3Q12873 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
CHD3Q12873 AC108734.3-201ENST00000481241 1165 ntBASIC1.78□□□□□ -2.12
CHD3Q12873 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC1.78□□□□□ -2.12
CHD3Q12873 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC1.78□□□□□ -2.12
CHD3Q12873 RNU1-40P-201ENST00000516816 164 ntBASIC1.78□□□□□ -2.12
CHD3Q12873 RNU1-97P-201ENST00000516872 164 ntBASIC1.78□□□□□ -2.12
CHD3Q12873 HMGN1P28-201ENST00000521340 364 ntBASIC1.78□□□□□ -2.12
CHD3Q12873 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC1.78□□□□□ -2.12
CHD3Q12873 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC1.78□□□□□ -2.12
CHD3Q12873 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC1.78□□□□□ -2.12
CHD3Q12873 AC002984.1-201ENST00000591692 448 ntBASIC1.78□□□□□ -2.12
CHD3Q12873 AC135178.6-201ENST00000605314 398 ntBASIC1.78□□□□□ -2.12
CHD3Q12873 AL121917.1-203ENST00000605534 577 ntBASIC1.78□□□□□ -2.12
CHD3Q12873 snoU13.31-201ENST00000607291 104 ntBASIC1.78□□□□□ -2.12
CHD3Q12873 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC1.78□□□□□ -2.12
CHD3Q12873 AL354685.2-201ENST00000448218 1447 ntBASIC1.78□□□□□ -2.12
CHD3Q12873 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC1.78□□□□□ -2.12
CHD3Q12873 SNORA67.3-201ENST00000384366 140 ntBASIC1.78□□□□□ -2.13
CHD3Q12873 RNU6-185P-201ENST00000384421 107 ntBASIC1.78□□□□□ -2.13
CHD3Q12873 MIR1250-201ENST00000408098 113 ntBASIC1.78□□□□□ -2.13
CHD3Q12873 RNU4ATAC16P-201ENST00000408512 126 ntBASIC1.78□□□□□ -2.13
CHD3Q12873 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC1.78□□□□□ -2.13
CHD3Q12873 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC1.78□□□□□ -2.13
CHD3Q12873 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC1.78□□□□□ -2.13
CHD3Q12873 RPL23AP7-203ENST00000449021 469 ntBASIC1.78□□□□□ -2.13
CHD3Q12873 AC109486.1-201ENST00000486833 374 ntBASIC1.78□□□□□ -2.13
CHD3Q12873 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC1.78□□□□□ -2.13
CHD3Q12873 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC1.78□□□□□ -2.13
CHD3Q12873 HSPE1P18-201ENST00000517602 280 ntBASIC1.78□□□□□ -2.13
CHD3Q12873 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC1.78□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms