Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC2.73□□□□□ -1.97
COL4A4P53420 DPH3P2-201ENST00000422618 250 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC019178.2-201ENST00000423595 505 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
COL4A4P53420 OR2B8P-201ENST00000432841 938 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.73□□□□□ -1.97
COL4A4P53420 PTENP1-201ENST00000447117 1215 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC2.73□□□□□ -1.97
COL4A4P53420 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
COL4A4P53420 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC2.73□□□□□ -1.97
COL4A4P53420 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.73□□□□□ -1.97
COL4A4P53420 AC234781.5-201ENST00000508429 271 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC2.73□□□□□ -1.97
COL4A4P53420 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC2.73□□□□□ -1.97
COL4A4P53420 HMGB1P46-201ENST00000520062 610 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC2.73□□□□□ -1.97
COL4A4P53420 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC2.73□□□□□ -1.97
COL4A4P53420 OR8L1P-201ENST00000534005 955 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC2.73□□□□□ -1.97
COL4A4P53420 OR4K7P-201ENST00000580232 945 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.73□□□□□ -1.97
COL4A4P53420 AL590229.1-201ENST00000603497 542 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC068944.2-201ENST00000610373 403 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC024257.5-201ENST00000612739 531 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC131238.1-201ENST00000617135 328 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC018755.4-201ENST00000619715 454 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC099842.1-201ENST00000619919 596 ntBASIC2.73□□□□□ -1.97
COL4A4P53420 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC2.73□□□□□ -1.97
COL4A4P53420 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
COL4A4P53420 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
COL4A4P53420 AL049737.1-201ENST00000413920 1403 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
COL4A4P53420 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL4A4P53420 AC093311.1-201ENST00000506586 2021 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.72□□□□□ -1.97
COL4A4P53420 XPOTP1-201ENST00000443317 2398 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL4A4P53420 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL4A4P53420 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL4A4P53420 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
COL4A4P53420 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL4A4P53420 Y_RNA.338-201ENST00000365320 114 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 Y_RNA.560-201ENST00000384689 102 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
COL4A4P53420 AL603865.2-201ENST00000401679 213 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 HSPD1P16-201ENST00000402302 394 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 AL133264.1-201ENST00000407157 562 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 RNU6ATAC25P-201ENST00000408798 117 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 ELOCP9-201ENST00000418624 239 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 SDCBPP3-201ENST00000419629 891 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 AC009414.1-201ENST00000427200 443 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 C8orf59P1-201ENST00000429930 303 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 GTF2IP3-201ENST00000433887 494 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
COL4A4P53420 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC2.72□□□□□ -1.97
COL4A4P53420 GSTA11P-201ENST00000452866 669 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC2.72□□□□□ -1.97
COL4A4P53420 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC2.72□□□□□ -1.97
COL4A4P53420 TRBV8-1-201ENST00000481590 279 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC2.72□□□□□ -1.97
COL4A4P53420 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC2.72□□□□□ -1.97
COL4A4P53420 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.72□□□□□ -1.97
COL4A4P53420 RNU6-759P-201ENST00000516740 103 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC2.72□□□□□ -1.97
COL4A4P53420 IGKV2-36-201ENST00000519999 223 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC2.72□□□□□ -1.97
COL4A4P53420 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC2.72□□□□□ -1.97
COL4A4P53420 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.72□□□□□ -1.97
COL4A4P53420 AC087897.1-201ENST00000550134 156 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.72□□□□□ -1.97
COL4A4P53420 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC2.72□□□□□ -1.97
COL4A4P53420 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC2.72□□□□□ -1.97
COL4A4P53420 AP001004.1-201ENST00000582468 324 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC2.72□□□□□ -1.97
COL4A4P53420 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC2.72□□□□□ -1.97
COL4A4P53420 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC2.72□□□□□ -1.97
COL4A4P53420 U6atac.1-201ENST00000616025 117 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 AC007490.1-201ENST00000624321 703 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
COL4A4P53420 AC087565.3-202ENST00000642085 1603 ntBASIC2.72□□□□□ -1.97
COL4A4P53420 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
COL4A4P53420 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.71□□□□□ -1.98
COL4A4P53420 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.71□□□□□ -1.98
COL4A4P53420 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
COL4A4P53420 RPL9P7-201ENST00000330965 580 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 AL161781.1-201ENST00000354277 403 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 Y_RNA.355-201ENST00000365462 98 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 RNU6-636P-201ENST00000384598 107 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 EI24P2-201ENST00000397776 1076 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 AL512633.1-201ENST00000399931 655 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 RPLP0P7-201ENST00000416050 667 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 RPS20P5-201ENST00000434808 360 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC2.71□□□□□ -1.98
COL4A4P53420 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
COL4A4P53420 UBE2V1P7-201ENST00000446395 340 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC2.71□□□□□ -1.98
COL4A4P53420 AC079203.1-201ENST00000487972 404 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 OR4G11P-201ENST00000492842 939 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC2.71□□□□□ -1.98
COL4A4P53420 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms