Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AL117351.1-201ENST00000438864 766 ntBASIC2.81□□□□□ -1.96
HOXC4P09017 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXC4P09017 TRIM60P18-201ENST00000441518 828 ntBASIC2.81□□□□□ -1.96
HOXC4P09017 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXC4P09017 AC112653.1-201ENST00000443851 386 ntBASIC2.81□□□□□ -1.96
HOXC4P09017 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXC4P09017 RPL37P4-201ENST00000448908 268 ntBASIC2.81□□□□□ -1.96
HOXC4P09017 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXC4P09017 AC011979.1-201ENST00000472300 483 ntBASIC2.81□□□□□ -1.96
HOXC4P09017 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC2.81□□□□□ -1.96
HOXC4P09017 MTCYBP37-201ENST00000510642 1133 ntBASIC2.81□□□□□ -1.96
HOXC4P09017 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.81□□□□□ -1.96
HOXC4P09017 AC008837.2-201ENST00000513076 418 ntBASIC2.81□□□□□ -1.96
HOXC4P09017 MRPS33P3-201ENST00000513456 322 ntBASIC2.81□□□□□ -1.96
HOXC4P09017 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXC4P09017 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
HOXC4P09017 ERP27-202ENST00000540097 993 ntTSL 2 BASIC2.81□□□□□ -1.96
HOXC4P09017 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXC4P09017 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.81□□□□□ -1.96
HOXC4P09017 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXC4P09017 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC2.81□□□□□ -1.96
HOXC4P09017 AP001542.2-201ENST00000593141 364 ntBASIC2.81□□□□□ -1.96
HOXC4P09017 Z99497.2-201ENST00000603634 310 ntBASIC2.81□□□□□ -1.96
HOXC4P09017 AC018638.7-201ENST00000605836 1114 ntBASIC2.81□□□□□ -1.96
HOXC4P09017 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC2.81□□□□□ -1.96
HOXC4P09017 AC064807.4-201ENST00000607201 407 ntBASIC2.81□□□□□ -1.96
HOXC4P09017 AC090115.4-201ENST00000609970 188 ntBASIC2.81□□□□□ -1.96
HOXC4P09017 AC084782.3-201ENST00000612282 578 ntBASIC2.81□□□□□ -1.96
HOXC4P09017 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
HOXC4P09017 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.81□□□□□ -1.96
HOXC4P09017 AL512506.2-201ENST00000624472 458 ntBASIC2.81□□□□□ -1.96
HOXC4P09017 AC092447.7-201ENST00000422212 1621 ntBASIC2.81□□□□□ -1.96
HOXC4P09017 GABRG2-229ENST00000641017 3628 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.8□□□□□ -1.96
HOXC4P09017 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.8□□□□□ -1.96
HOXC4P09017 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC2.8□□□□□ -1.96
HOXC4P09017 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
HOXC4P09017 AP005901.5-201ENST00000545779 1796 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC2.8□□□□□ -1.96
HOXC4P09017 AL513185.3-201ENST00000433335 1300 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 FAM133CP-201ENST00000332869 704 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 RNU1-35P-201ENST00000362782 153 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 SNORA5B-201ENST00000363786 132 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 Y_RNA.192-201ENST00000363977 102 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC2.8□□□□□ -1.96
HOXC4P09017 Y_RNA.408-201ENST00000383987 102 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 SNORA18.3-201ENST00000384122 132 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 MIR9-1-201ENST00000385198 89 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 MIR1302-8-201ENST00000408342 128 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXC4P09017 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
HOXC4P09017 AC016907.1-201ENST00000419483 435 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXC4P09017 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXC4P09017 UBE2D3P1-201ENST00000436669 444 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 AL445567.1-201ENST00000439121 144 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.8□□□□□ -1.96
HOXC4P09017 RPL23AP76-201ENST00000441860 458 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 COX6CP18-201ENST00000448769 222 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 AC079776.3-201ENST00000450665 370 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXC4P09017 VPS26AP1-201ENST00000483197 979 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXC4P09017 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC2.8□□□□□ -1.96
HOXC4P09017 RNA5SP356-201ENST00000515972 94 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 AC090136.1-201ENST00000520009 240 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.8□□□□□ -1.96
HOXC4P09017 ZNF705CP-201ENST00000530515 889 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXC4P09017 AL356057.1-201ENST00000533798 831 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC2.8□□□□□ -1.96
HOXC4P09017 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC2.8□□□□□ -1.96
HOXC4P09017 AC022662.1-201ENST00000580252 331 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 SNORD84-203ENST00000584275 78 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXC4P09017 AP001029.3-201ENST00000588063 596 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 AC146944.4-201ENST00000602697 718 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 XIAPP1-201ENST00000603162 600 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 AC069234.5-201ENST00000611056 416 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 AL139418.1-201ENST00000613613 177 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 AC090617.7-201ENST00000623952 126 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 MIR3974-201ENST00000637126 96 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.8□□□□□ -1.96
HOXC4P09017 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
HOXC4P09017 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
HOXC4P09017 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
HOXC4P09017 AC244517.1-201ENST00000606030 2086 ntBASIC2.8□□□□□ -1.96
HOXC4P09017 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.8□□□□□ -1.96
HOXC4P09017 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.79□□□□□ -1.96
HOXC4P09017 ZNF736P9Y-201ENST00000439586 1345 ntBASIC2.79□□□□□ -1.96
HOXC4P09017 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
HOXC4P09017 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
HOXC4P09017 RNU6-157P-201ENST00000383957 107 ntBASIC2.79□□□□□ -1.96
HOXC4P09017 SNORD116-1-201ENST00000384335 95 ntBASIC2.79□□□□□ -1.96
HOXC4P09017 AL591034.1-201ENST00000407447 340 ntBASIC2.79□□□□□ -1.96
HOXC4P09017 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC2.79□□□□□ -1.96
HOXC4P09017 AL133384.1-201ENST00000412744 351 ntBASIC2.79□□□□□ -1.96
HOXC4P09017 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC2.79□□□□□ -1.96
HOXC4P09017 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 122.1 ms