Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 HSPE1P3-201ENST00000559254 309 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXD4P09016 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXD4P09016 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.09□□□□□ -1.91
HOXD4P09016 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.09□□□□□ -1.91
HOXD4P09016 MIR4506-201ENST00000584693 77 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXD4P09016 U73023.1-201ENST00000603134 700 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 AC004987.4-201ENST00000603383 338 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 AC107214.2-201ENST00000608204 634 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 AC006023.2-201ENST00000609916 167 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 AC135507.2-201ENST00000612443 309 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 AC090116.1-201ENST00000615679 446 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 MIR7112-201ENST00000616126 65 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 PLCE1P1-201ENST00000622094 305 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.09□□□□□ -1.91
HOXD4P09016 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXD4P09016 CR381572.1-201ENST00000625098 102 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 AC006927.3-201ENST00000638789 384 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 MTND5P7-201ENST00000413558 1798 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 MTND4P16-201ENST00000466108 1367 ntBASIC3.09□□□□□ -1.92
HOXD4P09016 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.09□□□□□ -1.92
HOXD4P09016 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.09□□□□□ -1.92
HOXD4P09016 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.92
HOXD4P09016 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.09□□□□□ -1.92
HOXD4P09016 AP001350.1-201ENST00000601906 1524 ntBASIC3.09□□□□□ -1.92
HOXD4P09016 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD4P09016 AC008264.2-201ENST00000610193 3731 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXD4P09016 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.08□□□□□ -1.92
HOXD4P09016 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD4P09016 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD4P09016 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD4P09016 U3.4-201ENST00000363352 213 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 RNU6-777P-201ENST00000364265 104 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 RNA5SP42-201ENST00000364278 115 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 RNU6-730P-201ENST00000383954 104 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 RN7SKP123-201ENST00000410732 291 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXD4P09016 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXD4P09016 AC083875.1-201ENST00000419509 405 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 AL035410.1-201ENST00000427409 427 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXD4P09016 TRIM60P18-201ENST00000441518 828 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXD4P09016 RPL21P104-201ENST00000464143 478 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 AL049873.1-201ENST00000480540 376 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.08□□□□□ -1.92
HOXD4P09016 KCTD9P5-201ENST00000504141 1170 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD4P09016 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXD4P09016 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXD4P09016 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXD4P09016 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.08□□□□□ -1.92
HOXD4P09016 Y_RNA.655-201ENST00000515919 96 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 RNA5SP216-201ENST00000516111 123 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 IGKV2-26-201ENST00000518305 343 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD4P09016 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.08□□□□□ -1.92
HOXD4P09016 MIR3690-201ENST00000580266 75 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 RSL24D1P11-201ENST00000591045 491 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 AC025588.3-201ENST00000604182 274 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 AC064872.1-201ENST00000604823 1072 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 AC090425.2-201ENST00000608818 501 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 AC025588.4-201ENST00000615802 908 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXD4P09016 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXD4P09016 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXD4P09016 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.08□□□□□ -1.92
HOXD4P09016 AC010733.2-201ENST00000589496 5702 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD4P09016 PABPC1P9-201ENST00000426076 1612 ntBASIC3.08□□□□□ -1.92
HOXD4P09016 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXD4P09016 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXD4P09016 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXD4P09016 AL021368.2-201ENST00000606125 5352 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXD4P09016 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXD4P09016 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXD4P09016 RNA5SP383-201ENST00000362934 120 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 RNVU1-3-201ENST00000364313 161 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 RNU6-1181P-201ENST00000384191 106 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXD4P09016 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXD4P09016 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXD4P09016 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXD4P09016 MTCO2P18-201ENST00000457151 658 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 AP001486.1-201ENST00000463339 476 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 PABPC1P3-201ENST00000469174 459 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 VN1R17P-201ENST00000472048 1090 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.07□□□□□ -1.92
HOXD4P09016 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXD4P09016 RPL7P23-201ENST00000493874 747 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXD4P09016 AC010424.1-201ENST00000506336 297 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXD4P09016 AC091965.2-201ENST00000512324 613 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 SNORA64.4-201ENST00000516632 81 ntBASIC3.07□□□□□ -1.92
HOXD4P09016 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms