Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CLDN3O15551 AC005832.2-201ENST00000538921 1430 ntBASIC3.07□□□□□ -1.92
CLDN3O15551 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
CLDN3O15551 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.07□□□□□ -1.92
CLDN3O15551 AC092593.1-201ENST00000515413 1815 ntBASIC3.07□□□□□ -1.92
CLDN3O15551 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.07□□□□□ -1.92
CLDN3O15551 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
CLDN3O15551 TPTE2P4-201ENST00000258589 1605 ntBASIC3.06□□□□□ -1.92
CLDN3O15551 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CLDN3O15551 OR5J1P-201ENST00000313544 939 ntBASIC3.06□□□□□ -1.92
CLDN3O15551 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
CLDN3O15551 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.06□□□□□ -1.92
CLDN3O15551 SLC10A5P1-201ENST00000379063 1306 ntBASIC3.06□□□□□ -1.92
CLDN3O15551 Y_RNA.472-201ENST00000384322 102 ntBASIC3.06□□□□□ -1.92
CLDN3O15551 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
CLDN3O15551 HMGB1P17-201ENST00000403495 628 ntBASIC3.06□□□□□ -1.92
CLDN3O15551 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CLDN3O15551 AC105272.1-201ENST00000438604 198 ntBASIC3.06□□□□□ -1.92
CLDN3O15551 RNF2P1-201ENST00000442955 1010 ntBASIC3.06□□□□□ -1.92
CLDN3O15551 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.06□□□□□ -1.92
CLDN3O15551 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.06□□□□□ -1.92
CLDN3O15551 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.06□□□□□ -1.92
CLDN3O15551 RPS29P12-201ENST00000460178 152 ntBASIC3.06□□□□□ -1.92
CLDN3O15551 AP001486.1-201ENST00000463339 476 ntBASIC3.06□□□□□ -1.92
CLDN3O15551 AC091826.1-201ENST00000514065 313 ntBASIC3.06□□□□□ -1.92
CLDN3O15551 RNY4P37-201ENST00000516225 96 ntBASIC3.06□□□□□ -1.92
CLDN3O15551 RNU6-798P-201ENST00000516912 103 ntBASIC3.06□□□□□ -1.92
CLDN3O15551 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CLDN3O15551 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC3.06□□□□□ -1.92
CLDN3O15551 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC3.06□□□□□ -1.92
CLDN3O15551 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.06□□□□□ -1.92
CLDN3O15551 AC125611.2-201ENST00000551907 647 ntBASIC3.06□□□□□ -1.92
CLDN3O15551 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.06□□□□□ -1.92
CLDN3O15551 AC078899.3-201ENST00000599065 212 ntBASIC3.06□□□□□ -1.92
CLDN3O15551 BNIP3P27-201ENST00000599991 412 ntBASIC3.06□□□□□ -1.92
CLDN3O15551 AF131215.7-201ENST00000602443 707 ntBASIC3.06□□□□□ -1.92
CLDN3O15551 AP001429.1-201ENST00000602568 530 ntBASIC3.06□□□□□ -1.92
CLDN3O15551 BBIP1P1-201ENST00000602999 279 ntBASIC3.06□□□□□ -1.92
CLDN3O15551 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC3.06□□□□□ -1.92
CLDN3O15551 AL355493.4-201ENST00000618530 292 ntBASIC3.06□□□□□ -1.92
CLDN3O15551 AC090617.7-201ENST00000623952 126 ntBASIC3.06□□□□□ -1.92
CLDN3O15551 AC004808.1-201ENST00000627671 721 ntBASIC3.06□□□□□ -1.92
CLDN3O15551 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
CLDN3O15551 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.06□□□□□ -1.92
CLDN3O15551 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CLDN3O15551 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.06□□□□□ -1.92
CLDN3O15551 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.05□□□□□ -1.92
CLDN3O15551 AL079343.1-201ENST00000572358 1771 ntBASIC3.05□□□□□ -1.92
CLDN3O15551 AL022578.1-201ENST00000439330 1433 ntBASIC3.05□□□□□ -1.92
CLDN3O15551 RPL9P7-201ENST00000330965 580 ntBASIC3.05□□□□□ -1.92
CLDN3O15551 NACA3P-201ENST00000359690 648 ntBASIC3.05□□□□□ -1.92
CLDN3O15551 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
CLDN3O15551 MIR181A2-201ENST00000384863 110 ntBASIC3.05□□□□□ -1.92
CLDN3O15551 AL122016.1-201ENST00000403365 367 ntBASIC3.05□□□□□ -1.92
CLDN3O15551 AL031121.1-201ENST00000406553 254 ntBASIC3.05□□□□□ -1.92
CLDN3O15551 ATG3P1-201ENST00000419507 911 ntBASIC3.05□□□□□ -1.92
CLDN3O15551 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.05□□□□□ -1.92
CLDN3O15551 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.05□□□□□ -1.92
CLDN3O15551 AC010099.1-201ENST00000455434 375 ntBASIC3.05□□□□□ -1.92
CLDN3O15551 AL049873.1-201ENST00000480540 376 ntBASIC3.05□□□□□ -1.92
CLDN3O15551 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC3.05□□□□□ -1.92
CLDN3O15551 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.05□□□□□ -1.92
CLDN3O15551 AC008837.2-201ENST00000513076 418 ntBASIC3.05□□□□□ -1.92
CLDN3O15551 RNU6-528P-201ENST00000516926 100 ntBASIC3.05□□□□□ -1.92
CLDN3O15551 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.05□□□□□ -1.92
CLDN3O15551 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.05□□□□□ -1.92
CLDN3O15551 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.05□□□□□ -1.92
CLDN3O15551 GTF3AP2-201ENST00000557014 266 ntBASIC3.05□□□□□ -1.92
CLDN3O15551 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.05□□□□□ -1.92
CLDN3O15551 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
CLDN3O15551 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC3.05□□□□□ -1.92
CLDN3O15551 AC138761.3-201ENST00000579993 334 ntBASIC3.05□□□□□ -1.92
CLDN3O15551 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.05□□□□□ -1.92
CLDN3O15551 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC3.05□□□□□ -1.92
CLDN3O15551 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.05□□□□□ -1.92
CLDN3O15551 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.05□□□□□ -1.92
CLDN3O15551 LINC02211-204ENST00000642024 1070 ntBASIC3.05□□□□□ -1.92
CLDN3O15551 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.05□□□□□ -1.92
CLDN3O15551 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.05□□□□□ -1.92
CLDN3O15551 AP003122.5-201ENST00000527668 3766 ntBASIC3.05□□□□□ -1.92
CLDN3O15551 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
CLDN3O15551 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.04□□□□□ -1.92
CLDN3O15551 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.04□□□□□ -1.92
CLDN3O15551 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CLDN3O15551 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.04□□□□□ -1.92
CLDN3O15551 RNU6-76P-201ENST00000384060 104 ntBASIC3.04□□□□□ -1.92
CLDN3O15551 RNA5SP80-201ENST00000410475 111 ntBASIC3.04□□□□□ -1.92
CLDN3O15551 TPMTP2-201ENST00000414372 726 ntBASIC3.04□□□□□ -1.92
CLDN3O15551 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC3.04□□□□□ -1.92
CLDN3O15551 TIMM9P2-201ENST00000419324 266 ntBASIC3.04□□□□□ -1.92
CLDN3O15551 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
CLDN3O15551 AC104332.2-201ENST00000429959 156 ntBASIC3.04□□□□□ -1.92
CLDN3O15551 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.04□□□□□ -1.92
CLDN3O15551 AL513043.1-201ENST00000439124 535 ntBASIC3.04□□□□□ -1.92
CLDN3O15551 ARPC3P5-201ENST00000448802 534 ntBASIC3.04□□□□□ -1.92
CLDN3O15551 BX322784.1-201ENST00000455793 1077 ntBASIC3.04□□□□□ -1.92
CLDN3O15551 RNU7-136P-201ENST00000458819 69 ntBASIC3.04□□□□□ -1.92
CLDN3O15551 AL049874.1-201ENST00000489560 388 ntBASIC3.04□□□□□ -1.92
CLDN3O15551 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CLDN3O15551 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms