Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 AC092376.2-201ENST00000622621 4116 ntBASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 AC008725.1-201ENST00000605123 2263 ntBASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 Y_RNA.516-201ENST00000384541 124 ntBASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 AL513331.1-201ENST00000411908 397 ntBASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 AL451054.2-201ENST00000420896 202 ntBASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 DPPA2P1-201ENST00000428060 556 ntBASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 RPL35AP15-201ENST00000468042 339 ntBASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 RNU1-61P-201ENST00000516107 151 ntBASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 FAM92A1P1-201ENST00000528023 890 ntBASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 ZNF192P1-203ENST00000565888 810 ntBASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 Z84480.1-201ENST00000605131 311 ntBASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 FAM27D1-201ENST00000612308 341 ntBASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 PRO1804-201ENST00000623780 2050 ntBASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 ANKRD26P2-201ENST00000445530 1710 ntBASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC9Q9Y3X0 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 Y_RNA.1-201ENST00000352915 104 ntBASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 RNU6-701P-201ENST00000384059 107 ntBASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 RNU6-1103P-201ENST00000384150 107 ntBASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 RNU4-6P-201ENST00000410804 122 ntBASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 Y_RNA.619-201ENST00000410951 90 ntBASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 YPEL5P1-201ENST00000419731 367 ntBASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 RPL23AP30-201ENST00000432419 501 ntBASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 RN7SKP13-201ENST00000515933 244 ntBASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 RNU6-1256P-201ENST00000516539 103 ntBASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 NRON-201ENST00000517270 370 ntBASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 SYF2P1-201ENST00000550658 413 ntBASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 AC124947.2-202ENST00000552735 133 ntBASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 AC009161.2-201ENST00000624626 138 ntBASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 AL731532.2-201ENST00000623542 1953 ntBASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC9Q9Y3X0 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 MTND4P5-201ENST00000435821 1374 ntBASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 Y_RNA.6-201ENST00000362350 114 ntBASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 MIR3074-201ENST00000384885 81 ntBASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 RNU2-39P-201ENST00000410604 198 ntBASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 NDUFB4P7-201ENST00000423198 363 ntBASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 EIF4HP2-201ENST00000424380 563 ntBASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 HMGB3P15-201ENST00000507326 574 ntBASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 RN7SKP258-201ENST00000517151 304 ntBASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 AL021997.1-201ENST00000605757 193 ntBASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 AC008966.2-201ENST00000606157 453 ntBASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 AL021997.2-201ENST00000615674 271 ntBASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 AC124864.2-201ENST00000624736 186 ntBASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 AC009093.8-201ENST00000641769 292 ntBASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 OR5H6-203ENST00000642105 978 ntBASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC9Q9Y3X0 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 136 ms