Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
LHX3Q9UBR4 ZNF876P-202ENST00000398732 1485 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.03□□□□□ -1.92
LHX3Q9UBR4 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
LHX3Q9UBR4 FAM133CP-201ENST00000332869 704 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 RNU6-97P-201ENST00000363387 104 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 RNU6-289P-201ENST00000364093 107 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 SNORA4.1-201ENST00000364263 144 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 SNORA46-201ENST00000384762 135 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
LHX3Q9UBR4 RPS3AP24-201ENST00000407896 734 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 HMGB3P23-201ENST00000414981 585 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 RPL27AP8-201ENST00000424277 446 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 RPL35AP12-201ENST00000425362 338 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.03□□□□□ -1.92
LHX3Q9UBR4 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.03□□□□□ -1.92
LHX3Q9UBR4 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.03□□□□□ -1.92
LHX3Q9UBR4 AL592447.1-201ENST00000447592 540 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 PAXBP1P1-201ENST00000449315 447 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC3.03□□□□□ -1.92
LHX3Q9UBR4 SNORD121B-201ENST00000458838 81 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 RPL30P9-201ENST00000465586 330 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 RPS29P2-201ENST00000479278 136 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC3.03□□□□□ -1.92
LHX3Q9UBR4 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC3.03□□□□□ -1.92
LHX3Q9UBR4 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC3.03□□□□□ -1.92
LHX3Q9UBR4 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.03□□□□□ -1.92
LHX3Q9UBR4 RNA5SP216-201ENST00000516111 123 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 SNORA70.16-201ENST00000516390 95 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 RNU5A-4P-201ENST00000516588 111 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 RPL12P22-201ENST00000519073 490 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 FAM60DP-201ENST00000524174 632 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
LHX3Q9UBR4 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC3.03□□□□□ -1.92
LHX3Q9UBR4 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.03□□□□□ -1.92
LHX3Q9UBR4 AC061975.8-201ENST00000587058 721 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 AP001429.1-201ENST00000602568 530 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC3.03□□□□□ -1.92
LHX3Q9UBR4 AC008962.1-201ENST00000605729 304 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.03□□□□□ -1.92
LHX3Q9UBR4 AL450472.3-201ENST00000615578 367 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 AC002076.2-201ENST00000617362 122 ntBASIC3.03□□□□□ -1.92
LHX3Q9UBR4 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
LHX3Q9UBR4 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.03□□□□□ -1.92
LHX3Q9UBR4 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.03□□□□□ -1.92
LHX3Q9UBR4 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.03□□□□□ -1.93
LHX3Q9UBR4 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
LHX3Q9UBR4 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.02□□□□□ -1.93
LHX3Q9UBR4 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
LHX3Q9UBR4 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
LHX3Q9UBR4 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
LHX3Q9UBR4 RNU6-157P-201ENST00000383957 107 ntBASIC3.02□□□□□ -1.93
LHX3Q9UBR4 RNU6-1207P-201ENST00000384343 107 ntBASIC3.02□□□□□ -1.93
LHX3Q9UBR4 SNORA44-201ENST00000384584 132 ntBASIC3.02□□□□□ -1.93
LHX3Q9UBR4 MIR493-201ENST00000385254 89 ntBASIC3.02□□□□□ -1.93
LHX3Q9UBR4 AL356421.1-201ENST00000403255 413 ntBASIC3.02□□□□□ -1.93
LHX3Q9UBR4 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC3.02□□□□□ -1.93
LHX3Q9UBR4 AC245054.2-201ENST00000415639 319 ntBASIC3.02□□□□□ -1.93
LHX3Q9UBR4 AC083875.1-201ENST00000419509 405 ntBASIC3.02□□□□□ -1.93
LHX3Q9UBR4 OR2AS1P-201ENST00000427827 319 ntBASIC3.02□□□□□ -1.93
LHX3Q9UBR4 NANOGNBP1-201ENST00000448444 480 ntBASIC3.02□□□□□ -1.93
LHX3Q9UBR4 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.02□□□□□ -1.93
LHX3Q9UBR4 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.02□□□□□ -1.93
LHX3Q9UBR4 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.02□□□□□ -1.93
LHX3Q9UBR4 RPS29P26-201ENST00000477483 171 ntBASIC3.02□□□□□ -1.93
LHX3Q9UBR4 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.02□□□□□ -1.93
LHX3Q9UBR4 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
LHX3Q9UBR4 AL359273.1-201ENST00000510918 627 ntBASIC3.02□□□□□ -1.93
LHX3Q9UBR4 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.02□□□□□ -1.93
LHX3Q9UBR4 AC239860.2-201ENST00000525886 270 ntBASIC3.02□□□□□ -1.93
LHX3Q9UBR4 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.02□□□□□ -1.93
LHX3Q9UBR4 AL163153.1-201ENST00000554223 283 ntBASIC3.02□□□□□ -1.93
LHX3Q9UBR4 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.02□□□□□ -1.93
LHX3Q9UBR4 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.02□□□□□ -1.93
LHX3Q9UBR4 AC090186.1-201ENST00000605991 572 ntBASIC3.02□□□□□ -1.93
LHX3Q9UBR4 AL158211.4-201ENST00000606988 584 ntBASIC3.02□□□□□ -1.93
LHX3Q9UBR4 AC009570.1-201ENST00000609599 745 ntBASIC3.02□□□□□ -1.93
LHX3Q9UBR4 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.02□□□□□ -1.93
LHX3Q9UBR4 AL136981.2-201ENST00000617319 734 ntBASIC3.02□□□□□ -1.93
LHX3Q9UBR4 MIR6130-201ENST00000619419 109 ntBASIC3.02□□□□□ -1.93
LHX3Q9UBR4 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC3.02□□□□□ -1.93
LHX3Q9UBR4 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.02□□□□□ -1.93
LHX3Q9UBR4 CUL1P1-201ENST00000509510 2425 ntBASIC3.02□□□□□ -1.93
LHX3Q9UBR4 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.02□□□□□ -1.93
LHX3Q9UBR4 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.02□□□□□ -1.93
LHX3Q9UBR4 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 AC092326.2-201ENST00000624772 1561 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 RNU6-462P-201ENST00000362659 105 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 RNU1-140P-201ENST00000365040 165 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 Y_RNA.548-201ENST00000384656 105 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 RNA5SP274-201ENST00000410484 108 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 AC233728.2-201ENST00000425348 757 ntBASIC3.01□□□□□ -1.93
LHX3Q9UBR4 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.01□□□□□ -1.93
LHX3Q9UBR4 RNA5SP310-201ENST00000459084 116 ntBASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 140.4 ms