Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AL355994.1-201ENST00000424379 260 ntBASIC2.75□□□□□ -1.97
USP42Q9H9J4 AC006548.1-201ENST00000427470 102 ntBASIC2.75□□□□□ -1.97
USP42Q9H9J4 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC2.75□□□□□ -1.97
USP42Q9H9J4 AC004866.2-201ENST00000438285 481 ntBASIC2.75□□□□□ -1.97
USP42Q9H9J4 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.75□□□□□ -1.97
USP42Q9H9J4 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.75□□□□□ -1.97
USP42Q9H9J4 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
USP42Q9H9J4 AC004263.1-201ENST00000479327 332 ntBASIC2.75□□□□□ -1.97
USP42Q9H9J4 AC087190.1-201ENST00000484462 480 ntBASIC2.75□□□□□ -1.97
USP42Q9H9J4 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.75□□□□□ -1.97
USP42Q9H9J4 RPL38P4-201ENST00000502376 214 ntBASIC2.75□□□□□ -1.97
USP42Q9H9J4 SNORA31.8-201ENST00000516327 108 ntBASIC2.75□□□□□ -1.97
USP42Q9H9J4 AP000942.3-201ENST00000603702 160 ntBASIC2.75□□□□□ -1.97
USP42Q9H9J4 AC106900.2-201ENST00000604994 317 ntBASIC2.75□□□□□ -1.97
USP42Q9H9J4 AC103710.1-201ENST00000610003 901 ntBASIC2.75□□□□□ -1.97
USP42Q9H9J4 CR381572.1-201ENST00000625098 102 ntBASIC2.75□□□□□ -1.97
USP42Q9H9J4 SGO1P2-201ENST00000429458 1589 ntBASIC2.75□□□□□ -1.97
USP42Q9H9J4 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC2.75□□□□□ -1.97
USP42Q9H9J4 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
USP42Q9H9J4 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC2.74□□□□□ -1.97
USP42Q9H9J4 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
USP42Q9H9J4 Y_RNA.4-201ENST00000362333 112 ntBASIC2.74□□□□□ -1.97
USP42Q9H9J4 RNU6-1074P-201ENST00000383995 104 ntBASIC2.74□□□□□ -1.97
USP42Q9H9J4 RNU6-1027P-201ENST00000383998 107 ntBASIC2.74□□□□□ -1.97
USP42Q9H9J4 UBE2V1P11-201ENST00000411559 285 ntBASIC2.74□□□□□ -1.97
USP42Q9H9J4 FNDC3CP-201ENST00000420795 1155 ntBASIC2.74□□□□□ -1.97
USP42Q9H9J4 MTND4P24-201ENST00000424002 397 ntBASIC2.74□□□□□ -1.97
USP42Q9H9J4 AL445646.1-201ENST00000431784 216 ntBASIC2.74□□□□□ -1.97
USP42Q9H9J4 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC2.74□□□□□ -1.97
USP42Q9H9J4 TRBV26-201ENST00000456572 344 ntBASIC2.74□□□□□ -1.97
USP42Q9H9J4 RPL23AP70-201ENST00000483361 460 ntBASIC2.74□□□□□ -1.97
USP42Q9H9J4 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
USP42Q9H9J4 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.74□□□□□ -1.97
USP42Q9H9J4 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC2.74□□□□□ -1.97
USP42Q9H9J4 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC2.74□□□□□ -1.97
USP42Q9H9J4 AP000889.2-201ENST00000532684 490 ntBASIC2.74□□□□□ -1.97
USP42Q9H9J4 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.74□□□□□ -1.97
USP42Q9H9J4 AC090666.1-201ENST00000578241 445 ntBASIC2.74□□□□□ -1.97
USP42Q9H9J4 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.74□□□□□ -1.97
USP42Q9H9J4 AL022099.1-201ENST00000604551 712 ntBASIC2.74□□□□□ -1.97
USP42Q9H9J4 AC016727.1-205ENST00000605437 569 ntBASIC2.74□□□□□ -1.97
USP42Q9H9J4 AP004247.3-201ENST00000608682 624 ntBASIC2.74□□□□□ -1.97
USP42Q9H9J4 AC073968.1-201ENST00000618594 637 ntBASIC2.74□□□□□ -1.97
USP42Q9H9J4 AC008432.1-201ENST00000615912 1320 ntBASIC2.74□□□□□ -1.97
USP42Q9H9J4 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.74□□□□□ -1.97
USP42Q9H9J4 ZNF355P-201ENST00000427301 3216 ntBASIC2.74□□□□□ -1.97
USP42Q9H9J4 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
USP42Q9H9J4 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
USP42Q9H9J4 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC2.74□□□□□ -1.97
USP42Q9H9J4 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.74□□□□□ -1.97
USP42Q9H9J4 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
USP42Q9H9J4 RNU6-252P-201ENST00000363232 107 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
USP42Q9H9J4 RNU6-1005P-201ENST00000384519 107 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 SNORA80E-201ENST00000384744 137 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 CYCSP49-201ENST00000420810 319 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 RPP40P1-201ENST00000426762 456 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 AL590623.1-201ENST00000427864 105 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.73□□□□□ -1.97
USP42Q9H9J4 RPS29P12-201ENST00000460178 152 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 RPL30P14-201ENST00000482744 348 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC2.73□□□□□ -1.97
USP42Q9H9J4 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.73□□□□□ -1.97
USP42Q9H9J4 RNU6-56P-201ENST00000516986 93 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.73□□□□□ -1.97
USP42Q9H9J4 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC2.73□□□□□ -1.97
USP42Q9H9J4 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC2.73□□□□□ -1.97
USP42Q9H9J4 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
USP42Q9H9J4 AC068339.2-201ENST00000534395 618 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC2.73□□□□□ -1.97
USP42Q9H9J4 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.73□□□□□ -1.97
USP42Q9H9J4 DNAJC8P1-201ENST00000554535 372 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.73□□□□□ -1.97
USP42Q9H9J4 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.73□□□□□ -1.97
USP42Q9H9J4 AC021851.1-201ENST00000608537 1082 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 AC013562.2-201ENST00000611632 603 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 AL360181.4-201ENST00000621752 134 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 MIR6132-201ENST00000622083 109 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 AL356266.1-201ENST00000623311 483 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 AC090617.7-201ENST00000623952 126 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 AC111188.2-201ENST00000529697 1387 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.73□□□□□ -1.97
USP42Q9H9J4 ZNF271P-202ENST00000465539 1970 ntBASIC2.73□□□□□ -1.97
USP42Q9H9J4 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
USP42Q9H9J4 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
USP42Q9H9J4 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
USP42Q9H9J4 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC2.72□□□□□ -1.97
USP42Q9H9J4 RNU6-821P-201ENST00000390995 107 ntBASIC2.72□□□□□ -1.97
USP42Q9H9J4 RNU6-712P-201ENST00000410558 100 ntBASIC2.72□□□□□ -1.97
USP42Q9H9J4 AL606495.1-201ENST00000422100 813 ntBASIC2.72□□□□□ -1.97
USP42Q9H9J4 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.72□□□□□ -1.97
USP42Q9H9J4 AC114878.1-201ENST00000441166 358 ntBASIC2.72□□□□□ -1.97
USP42Q9H9J4 AL513321.1-201ENST00000441175 761 ntBASIC2.72□□□□□ -1.97
USP42Q9H9J4 HMGN3P1-201ENST00000453847 193 ntBASIC2.72□□□□□ -1.97
USP42Q9H9J4 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC2.72□□□□□ -1.97
USP42Q9H9J4 HIGD1AP6-201ENST00000521833 279 ntBASIC2.72□□□□□ -1.97
USP42Q9H9J4 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms