Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC1.5□□□□□ -2.17
VPS25Q9BRG1 WWP1P1-201ENST00000466609 2769 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 RNA5SP125-201ENST00000364843 120 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
VPS25Q9BRG1 RNU6-441P-201ENST00000384545 106 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 MIR554-201ENST00000384874 96 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 RN7SKP202-201ENST00000410439 330 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 RNA5SP489-201ENST00000410986 109 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AC092745.2-202ENST00000411880 369 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AL592148.1-201ENST00000413568 445 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AL158825.1-201ENST00000414735 521 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AC096920.1-201ENST00000423991 241 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC1.5□□□□□ -2.17
VPS25Q9BRG1 HSPE1P21-201ENST00000438283 308 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC1.5□□□□□ -2.17
VPS25Q9BRG1 RPL7P12-201ENST00000446719 750 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 RPS20P24-201ENST00000457473 361 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.5□□□□□ -2.17
VPS25Q9BRG1 snoU109.4-201ENST00000458953 143 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AL049714.1-201ENST00000466686 347 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 RPL7P49-201ENST00000471402 708 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AL359273.1-201ENST00000510918 627 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.5□□□□□ -2.17
VPS25Q9BRG1 OR5AL2P-201ENST00000532185 920 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC1.5□□□□□ -2.17
VPS25Q9BRG1 LINC00933-203ENST00000559812 219 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AC009303.3-201ENST00000591103 736 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AC126118.1-201ENST00000607744 628 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
VPS25Q9BRG1 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC1.5□□□□□ -2.17
VPS25Q9BRG1 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AL160394.1-201ENST00000624765 724 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AL356118.1-201ENST00000635272 1078 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.5□□□□□ -2.17
VPS25Q9BRG1 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.5□□□□□ -2.17
VPS25Q9BRG1 AC046144.1-201ENST00000478559 1853 ntBASIC1.5□□□□□ -2.17
VPS25Q9BRG1 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
VPS25Q9BRG1 HSPA8P4-201ENST00000511877 1920 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 AC126755.2-208ENST00000327792 462 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 AC138969.1-213ENST00000331436 462 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 DEFB108F-201ENST00000344638 222 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 RN7SKP227-201ENST00000364445 330 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 SNORA23-201ENST00000365128 182 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
VPS25Q9BRG1 NPM1P10-201ENST00000398310 865 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 RPA3-203ENST00000401447 414 ntTSL 3 BASIC1.49□□□□□ -2.17
VPS25Q9BRG1 MIR1290-201ENST00000408735 78 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 RN7SKP158-201ENST00000410453 326 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC1.49□□□□□ -2.17
VPS25Q9BRG1 UBE2V1P9-201ENST00000414760 368 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 AJ239321.1-201ENST00000424255 564 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 HMGB1P9-201ENST00000429856 646 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 PPP1R2P5-201ENST00000457256 603 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC1.49□□□□□ -2.17
VPS25Q9BRG1 BZW1P2-201ENST00000473537 826 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 VPS26AP1-201ENST00000483197 979 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 AC006445.1-201ENST00000491925 405 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 CEACAMP10-202ENST00000495431 496 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 AC147055.4-201ENST00000504399 745 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 PRELID3BP5-201ENST00000508612 460 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 AC026436.1-201ENST00000510537 270 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.49□□□□□ -2.17
VPS25Q9BRG1 FABP5P6-201ENST00000510588 409 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.49□□□□□ -2.17
VPS25Q9BRG1 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC1.49□□□□□ -2.17
VPS25Q9BRG1 OR4V1P-201ENST00000525394 1140 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 DEFB108D-201ENST00000527787 222 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 EEF1B2P4-201ENST00000551398 348 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.49□□□□□ -2.17
VPS25Q9BRG1 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC1.49□□□□□ -2.17
VPS25Q9BRG1 AC061975.8-201ENST00000587058 721 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC1.49□□□□□ -2.17
VPS25Q9BRG1 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC1.49□□□□□ -2.17
VPS25Q9BRG1 AC116618.1-201ENST00000634617 774 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.49□□□□□ -2.17
VPS25Q9BRG1 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC1.49□□□□□ -2.17
VPS25Q9BRG1 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC1.49□□□□□ -2.17
VPS25Q9BRG1 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
VPS25Q9BRG1 SNORA63.1-201ENST00000362493 131 ntBASIC1.48□□□□□ -2.17
VPS25Q9BRG1 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC1.48□□□□□ -2.17
VPS25Q9BRG1 OR5H15-201ENST00000383696 930 ntBASIC1.48□□□□□ -2.17
VPS25Q9BRG1 TAF9BP2-201ENST00000400856 499 ntBASIC1.48□□□□□ -2.17
VPS25Q9BRG1 AL450338.1-201ENST00000407987 512 ntBASIC1.48□□□□□ -2.17
VPS25Q9BRG1 AC003685.2-201ENST00000422795 395 ntBASIC1.48□□□□□ -2.17
VPS25Q9BRG1 AL353729.1-201ENST00000425044 720 ntBASIC1.48□□□□□ -2.17
VPS25Q9BRG1 FO393419.3-201ENST00000428741 282 ntBASIC1.48□□□□□ -2.17
VPS25Q9BRG1 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC1.48□□□□□ -2.17
VPS25Q9BRG1 AL133547.1-201ENST00000448546 220 ntBASIC1.48□□□□□ -2.17
VPS25Q9BRG1 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC1.48□□□□□ -2.17
VPS25Q9BRG1 AP001486.1-201ENST00000463339 476 ntBASIC1.48□□□□□ -2.17
VPS25Q9BRG1 RPS4XP10-201ENST00000465034 731 ntBASIC1.48□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms