Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 BNIP3P22-201ENST00000593399 556 ntBASIC4.49□□□□□ -1.69
NUP88Q99567 AC024220.1-201ENST00000603675 484 ntBASIC4.49□□□□□ -1.69
NUP88Q99567 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.49□□□□□ -1.69
NUP88Q99567 AL158209.2-201ENST00000619266 216 ntBASIC4.49□□□□□ -1.69
NUP88Q99567 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC4.49□□□□□ -1.69
NUP88Q99567 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
NUP88Q99567 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
NUP88Q99567 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
NUP88Q99567 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
NUP88Q99567 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
NUP88Q99567 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
NUP88Q99567 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.49□□□□□ -1.69
NUP88Q99567 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
NUP88Q99567 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.48□□□□□ -1.69
NUP88Q99567 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
NUP88Q99567 DDX10P1-201ENST00000448545 1933 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
NUP88Q99567 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.48□□□□□ -1.69
NUP88Q99567 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
NUP88Q99567 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
NUP88Q99567 Y_RNA.6-201ENST00000362350 114 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 RNA5SP167-201ENST00000365461 116 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 SNORA5A-201ENST00000384111 134 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 RPS3AP24-201ENST00000407896 734 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 TOMM22P1-201ENST00000418578 312 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 PIGFP2-201ENST00000421400 651 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 AL591419.1-201ENST00000427423 339 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 AC137499.1-201ENST00000427602 88 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 RPL21P112-201ENST00000434403 463 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC4.48□□□□□ -1.69
NUP88Q99567 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC4.48□□□□□ -1.69
NUP88Q99567 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC4.48□□□□□ -1.69
NUP88Q99567 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC4.48□□□□□ -1.69
NUP88Q99567 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.48□□□□□ -1.69
NUP88Q99567 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC4.48□□□□□ -1.69
NUP88Q99567 AC069499.1-201ENST00000489433 509 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 KLHL2P1-201ENST00000508691 521 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 RNU1-95P-201ENST00000516357 160 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 RNU1-128P-201ENST00000516704 160 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC4.48□□□□□ -1.69
NUP88Q99567 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC4.48□□□□□ -1.69
NUP88Q99567 AC012182.1-201ENST00000570133 895 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.48□□□□□ -1.69
NUP88Q99567 AC010928.3-201ENST00000587712 541 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC4.48□□□□□ -1.69
NUP88Q99567 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
NUP88Q99567 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.48□□□□□ -1.69
NUP88Q99567 AL450472.3-201ENST00000615578 367 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 AL591424.2-201ENST00000617023 128 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 AC015967.1-201ENST00000619893 476 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 SEPT14P19-203ENST00000633205 211 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 AC068137.3-201ENST00000639191 341 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 AC073869.6-201ENST00000640656 341 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.48□□□□□ -1.69
NUP88Q99567 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
NUP88Q99567 MFSD8-236ENST00000641509 4050 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
NUP88Q99567 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
NUP88Q99567 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.47□□□□□ -1.69
NUP88Q99567 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
NUP88Q99567 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.47□□□□□ -1.69
NUP88Q99567 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.47□□□□□ -1.69
NUP88Q99567 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
NUP88Q99567 OR1S2-201ENST00000302592 978 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 RNU6-173P-201ENST00000364215 104 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 RNU6-517P-201ENST00000384362 110 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 MIR23A-201ENST00000385245 73 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 RNU6-882P-201ENST00000391025 103 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 SOD2P1-201ENST00000396543 562 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 GSTA9P-201ENST00000406231 611 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC4.47□□□□□ -1.69
NUP88Q99567 AL451074.3-201ENST00000437709 472 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 AC093156.1-201ENST00000440382 670 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.47□□□□□ -1.69
NUP88Q99567 FGF7P3-201ENST00000454645 303 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 MTND1P12-201ENST00000455231 147 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.47□□□□□ -1.69
NUP88Q99567 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 RPS15AP36-201ENST00000492022 382 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 RPL9P6-201ENST00000492764 598 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 KCTD9P5-201ENST00000504141 1170 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.47□□□□□ -1.69
NUP88Q99567 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC4.47□□□□□ -1.69
NUP88Q99567 AC021146.1-201ENST00000511202 716 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 RNA5SP337-201ENST00000517007 109 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.47□□□□□ -1.69
NUP88Q99567 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC4.47□□□□□ -1.69
NUP88Q99567 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.47□□□□□ -1.69
NUP88Q99567 AL845331.3-202ENST00000562856 261 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
NUP88Q99567 uc_338.12-201ENST00000616344 181 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 MIR6130-201ENST00000619419 109 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 AC073534.2-201ENST00000620377 381 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 MIR6075-201ENST00000620782 95 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.47□□□□□ -1.69
NUP88Q99567 AC243312.2-201ENST00000623340 601 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 AC095031.1-201ENST00000623685 672 ntBASIC4.47□□□□□ -1.69
NUP88Q99567 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC4.47□□□□□ -1.69
NUP88Q99567 AL034408.1-202ENST00000636088 415 ntBASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 170 ms