Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC126389.1-201ENST00000477436 290 ntBASIC2.3□□□□□ -2.04
CCDC42Q96M95 RPL31P41-201ENST00000477967 372 ntBASIC2.3□□□□□ -2.04
CCDC42Q96M95 RPL23AP49-201ENST00000492925 468 ntBASIC2.3□□□□□ -2.04
CCDC42Q96M95 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC2.3□□□□□ -2.04
CCDC42Q96M95 AP001646.1-201ENST00000527936 915 ntBASIC2.3□□□□□ -2.04
CCDC42Q96M95 EEF1B2P4-201ENST00000551398 348 ntBASIC2.3□□□□□ -2.04
CCDC42Q96M95 AMZ2P1-203ENST00000565833 850 ntBASIC2.3□□□□□ -2.04
CCDC42Q96M95 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.3□□□□□ -2.04
CCDC42Q96M95 RPS15AP11-201ENST00000594193 385 ntBASIC2.3□□□□□ -2.04
CCDC42Q96M95 AC025588.4-201ENST00000615802 908 ntBASIC2.3□□□□□ -2.04
CCDC42Q96M95 AC025034.2-201ENST00000623264 286 ntBASIC2.3□□□□□ -2.04
CCDC42Q96M95 AP000553.5-201ENST00000641933 54 ntBASIC2.3□□□□□ -2.04
CCDC42Q96M95 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.29□□□□□ -2.04
CCDC42Q96M95 SDAD1P2-201ENST00000441308 2028 ntBASIC2.29□□□□□ -2.04
CCDC42Q96M95 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
CCDC42Q96M95 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC42Q96M95 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
CCDC42Q96M95 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
CCDC42Q96M95 AL596028.1-201ENST00000326971 197 ntBASIC2.29□□□□□ -2.04
CCDC42Q96M95 RNU6-1072P-201ENST00000384703 107 ntBASIC2.29□□□□□ -2.04
CCDC42Q96M95 RNU6-443P-201ENST00000384780 107 ntBASIC2.29□□□□□ -2.04
CCDC42Q96M95 AL356057.1-202ENST00000402263 756 ntBASIC2.29□□□□□ -2.04
CCDC42Q96M95 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC42Q96M95 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.29□□□□□ -2.04
CCDC42Q96M95 HMGN2P38-201ENST00000423806 265 ntBASIC2.29□□□□□ -2.04
CCDC42Q96M95 MTCO3P30-201ENST00000426425 670 ntBASIC2.29□□□□□ -2.04
CCDC42Q96M95 MTND4LP10-201ENST00000435146 291 ntBASIC2.29□□□□□ -2.04
CCDC42Q96M95 RPL23AP7-203ENST00000449021 469 ntBASIC2.29□□□□□ -2.04
CCDC42Q96M95 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC42Q96M95 BX248409.1-201ENST00000455497 255 ntBASIC2.29□□□□□ -2.04
CCDC42Q96M95 snoU109.4-201ENST00000458953 143 ntBASIC2.29□□□□□ -2.04
CCDC42Q96M95 RNU6-1095P-201ENST00000516148 108 ntBASIC2.29□□□□□ -2.04
CCDC42Q96M95 CASP1P1-201ENST00000526345 212 ntBASIC2.29□□□□□ -2.04
CCDC42Q96M95 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
CCDC42Q96M95 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC42Q96M95 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.29□□□□□ -2.04
CCDC42Q96M95 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
CCDC42Q96M95 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC42Q96M95 HMGB1P14-201ENST00000557424 591 ntBASIC2.29□□□□□ -2.04
CCDC42Q96M95 OR4K7P-201ENST00000580232 945 ntBASIC2.29□□□□□ -2.04
CCDC42Q96M95 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC42Q96M95 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC42Q96M95 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC2.29□□□□□ -2.04
CCDC42Q96M95 AC012443.1-201ENST00000605605 231 ntBASIC2.29□□□□□ -2.04
CCDC42Q96M95 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
CCDC42Q96M95 FRG1HP-204ENST00000617940 757 ntBASIC2.29□□□□□ -2.04
CCDC42Q96M95 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.29□□□□□ -2.04
CCDC42Q96M95 ZNF663P-202ENST00000641770 1131 ntBASIC2.29□□□□□ -2.04
CCDC42Q96M95 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.29□□□□□ -2.04
CCDC42Q96M95 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
CCDC42Q96M95 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
CCDC42Q96M95 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.29□□□□□ -2.04
CCDC42Q96M95 MTND4P1-201ENST00000457501 1466 ntBASIC2.28□□□□□ -2.04
CCDC42Q96M95 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
CCDC42Q96M95 RNU6-461P-201ENST00000364195 107 ntBASIC2.28□□□□□ -2.04
CCDC42Q96M95 RNA5SP160-201ENST00000364866 120 ntBASIC2.28□□□□□ -2.04
CCDC42Q96M95 RNA5SP354-201ENST00000391247 136 ntBASIC2.28□□□□□ -2.04
CCDC42Q96M95 AL031679.1-201ENST00000400616 525 ntBASIC2.28□□□□□ -2.04
CCDC42Q96M95 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC2.28□□□□□ -2.04
CCDC42Q96M95 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC42Q96M95 AC009296.1-201ENST00000443146 155 ntBASIC2.28□□□□□ -2.04
CCDC42Q96M95 PABPC1P3-201ENST00000469174 459 ntBASIC2.28□□□□□ -2.04
CCDC42Q96M95 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC42Q96M95 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC42Q96M95 SNORA26.10-201ENST00000516427 141 ntBASIC2.28□□□□□ -2.04
CCDC42Q96M95 SCARNA16.3-201ENST00000516595 184 ntBASIC2.28□□□□□ -2.04
CCDC42Q96M95 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC42Q96M95 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC2.28□□□□□ -2.04
CCDC42Q96M95 OR4P1P-201ENST00000530808 1136 ntBASIC2.28□□□□□ -2.04
CCDC42Q96M95 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
CCDC42Q96M95 AC009127.3-201ENST00000570531 403 ntBASIC2.28□□□□□ -2.04
CCDC42Q96M95 AC002984.1-201ENST00000591692 448 ntBASIC2.28□□□□□ -2.04
CCDC42Q96M95 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC2.28□□□□□ -2.04
CCDC42Q96M95 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC2.28□□□□□ -2.04
CCDC42Q96M95 AC007938.3-201ENST00000604965 623 ntBASIC2.28□□□□□ -2.04
CCDC42Q96M95 AP002826.1-201ENST00000608835 315 ntBASIC2.28□□□□□ -2.04
CCDC42Q96M95 AC009032.1-201ENST00000617574 431 ntBASIC2.28□□□□□ -2.04
CCDC42Q96M95 UCA1.1-201ENST00000620952 75 ntBASIC2.28□□□□□ -2.04
CCDC42Q96M95 AC098679.5-201ENST00000624394 571 ntBASIC2.28□□□□□ -2.04
CCDC42Q96M95 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.28□□□□□ -2.04
CCDC42Q96M95 CR848007.1-201ENST00000442354 1699 ntBASIC2.28□□□□□ -2.05
CCDC42Q96M95 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
CCDC42Q96M95 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
CCDC42Q96M95 RNU1-105P-201ENST00000363470 161 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 U3.12-201ENST00000364498 214 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 RNU1-52P-201ENST00000384190 164 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 RNU6-40P-201ENST00000384254 107 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 HMGB3P2-201ENST00000411913 584 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.27□□□□□ -2.05
CCDC42Q96M95 AC009237.2-201ENST00000421358 284 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 AC233981.1-201ENST00000423224 461 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC42Q96M95 SRIP2-201ENST00000428470 166 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 OR4K11P-201ENST00000431829 904 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC2.27□□□□□ -2.05
CCDC42Q96M95 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC42Q96M95 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC2.27□□□□□ -2.05
CCDC42Q96M95 snoU13.22-201ENST00000459428 104 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 AC090515.1-201ENST00000465295 476 ntBASIC2.27□□□□□ -2.05
CCDC42Q96M95 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 189.8 ms