Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC3□□□□□ -1.93
ZNF540Q8NDQ6 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3□□□□□ -1.93
ZNF540Q8NDQ6 VN1R78P-201ENST00000597393 564 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3□□□□□ -1.93
ZNF540Q8NDQ6 AL158211.4-201ENST00000606988 584 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3□□□□□ -1.93
ZNF540Q8NDQ6 AC004808.1-201ENST00000627671 721 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 OR4G3P-201ENST00000633500 913 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 AL079343.1-201ENST00000572358 1771 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 AL353743.1-202ENST00000431724 1695 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 CR848007.1-201ENST00000442354 1699 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 RNA5SP197-201ENST00000363357 119 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 SNORA38.1-201ENST00000364172 131 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 RNU1-33P-201ENST00000364249 162 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 SNORA51.4-201ENST00000364993 124 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 RNVU1-14-201ENST00000384770 164 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 RN7SKP111-201ENST00000410349 271 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 BMS1P22-201ENST00000414726 313 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 RPL7P37-201ENST00000425095 738 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 YWHAZP7-201ENST00000436906 631 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 TRGVB-201ENST00000453257 471 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 MTND1P9-201ENST00000453775 944 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 OFD1P7Y-201ENST00000454643 1155 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 RPL31P41-201ENST00000477967 372 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 FAM172BP-201ENST00000487497 1089 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 RPL7P38-201ENST00000488396 739 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 AC110760.3-202ENST00000515177 371 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 RNU6-583P-201ENST00000516012 92 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 SNORA74D-201ENST00000516404 141 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 RPPH1-2P-201ENST00000516688 293 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 YWHAZP1-201ENST00000556286 722 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 AC103810.1-201ENST00000579873 453 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 AC068313.1-201ENST00000604028 1008 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 AC093673.2-201ENST00000609674 331 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 AL355816.2-201ENST00000610049 647 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 AC023158.2-201ENST00000614876 543 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 AL512427.1-201ENST00000618593 349 ntBASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.99□□□□□ -1.93
ZNF540Q8NDQ6 OR4G2P-202ENST00000641004 1759 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 RNU6-359P-201ENST00000365466 108 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 SNORA36C-201ENST00000384289 132 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 MIR325-201ENST00000385260 98 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 AC099548.1-201ENST00000421443 426 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 AC098614.2-201ENST00000426040 255 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 AC008850.1-201ENST00000427546 362 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 AC092427.1-202ENST00000430569 476 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 TRBV26OR9-2-201ENST00000432077 293 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 MTCYBP45-201ENST00000435243 565 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 RPS15AP27-201ENST00000449183 343 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 DCLRE1CP1-201ENST00000454630 470 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 AL135752.1-201ENST00000479477 471 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 AC079203.1-201ENST00000487972 404 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 AC113155.1-201ENST00000511141 769 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 TTC39CP1-201ENST00000512513 755 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 RPL21P12-201ENST00000559810 515 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 AL158211.1-201ENST00000566763 763 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 AC006504.3-201ENST00000586818 523 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 AC068620.3-201ENST00000602749 560 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 AL161729.4-201ENST00000604650 476 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 AC024257.5-201ENST00000612739 531 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 AC016597.2-201ENST00000613256 341 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 AC013476.2-201ENST00000614456 459 ntBASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 RDM1-219ENST00000615378 542 ntTSL 3 BASIC2.98□□□□□ -1.93
ZNF540Q8NDQ6 AL356321.1-201ENST00000621360 228 ntBASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms