Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC002550.2-201ENST00000621246 394 ntBASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 AP000676.4-201ENST00000624659 623 ntBASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 AL159972.1-201ENST00000625150 448 ntBASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 AC091564.4-201ENST00000533934 2194 ntBASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 OR4K11P-201ENST00000431829 904 ntBASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 AC009237.8-201ENST00000445492 379 ntBASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 Z99127.3-201ENST00000448158 395 ntBASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 AC092798.1-201ENST00000458542 409 ntBASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 ARL4AP2-201ENST00000507378 601 ntBASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 AC008885.1-201ENST00000514930 301 ntBASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 RNU6-150P-201ENST00000516237 95 ntBASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 RN7SKP282-201ENST00000516824 299 ntBASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 RN7SKP272-201ENST00000516988 232 ntBASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 AC009812.2-201ENST00000517657 457 ntBASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 PRELID3BP8-201ENST00000604148 295 ntBASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 AC100793.4-201ENST00000613683 429 ntBASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 AL445264.1-201ENST00000621719 171 ntBASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 AC099654.8-201ENST00000637757 681 ntBASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HDDC3Q8N4P3 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 MTND5P24-201ENST00000438892 1767 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 MIR449A-201ENST00000362113 91 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 RNU6-97P-201ENST00000363387 104 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 RNU6-560P-201ENST00000364007 108 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 SNORA71.1-201ENST00000364523 117 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 SNORD15B-201ENST00000384714 146 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 RNU6-952P-201ENST00000391164 108 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 RNA5SP31-201ENST00000411144 127 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 AL139413.1-201ENST00000421309 217 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 BX679664.1-201ENST00000434429 253 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 LSM1P1-201ENST00000438629 273 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 HMGB3P11-201ENST00000440127 604 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 RPL32P28-201ENST00000443577 397 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 AC002381.1-201ENST00000447049 280 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 FABP5P12-201ENST00000515543 389 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 RNU6-714P-201ENST00000516963 103 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 OR4H12P-201ENST00000556269 907 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 HMGB1P14-201ENST00000557424 591 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 ACTR3BP3-201ENST00000565577 979 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 ANKRD36BP2-206ENST00000575193 1245 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 OR4K7P-201ENST00000580232 945 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 AC136601.2-201ENST00000604356 474 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 AL033523.1-201ENST00000605153 153 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 AL158050.2-201ENST00000605336 568 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 AL161629.2-201ENST00000615347 275 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 OR5H6-203ENST00000642105 978 ntBASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.16□□□□□ -1.9
HDDC3Q8N4P3 AP003122.5-201ENST00000527668 3766 ntBASIC3.15□□□□□ -1.9
HDDC3Q8N4P3 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
HDDC3Q8N4P3 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
HDDC3Q8N4P3 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.15□□□□□ -1.9
HDDC3Q8N4P3 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.15□□□□□ -1.9
HDDC3Q8N4P3 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 RNU6-198P-201ENST00000384258 104 ntBASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 SAR1AP4-201ENST00000429225 591 ntBASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 TAAR7P-201ENST00000436141 242 ntBASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 RPL23AP58-201ENST00000440453 469 ntBASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 EEF1A1P39-201ENST00000440791 250 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms