Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ZNF519P3-201ENST00000557158 1032 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AC022968.1-201ENST00000567372 442 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AP001429.1-201ENST00000602568 530 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 RN7SKP299-201ENST00000606679 301 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 OR10AB1P-201ENST00000609613 938 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 DLEU2_1.1-201ENST00000612089 120 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 DLEU2_1.2-201ENST00000614667 120 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AC108479.2-201ENST00000617314 601 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AC012150.2-201ENST00000621300 544 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AL360181.4-201ENST00000621752 134 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AL603839.4-201ENST00000624658 1005 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AC090582.1-201ENST00000636321 199 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.65□□□□□ -1.82
COL28A1Q2UY09 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.65□□□□□ -1.82
COL28A1Q2UY09 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.82
COL28A1Q2UY09 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
COL28A1Q2UY09 MTCO1P9-201ENST00000505577 1534 ntBASIC3.65□□□□□ -1.82
COL28A1Q2UY09 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
COL28A1Q2UY09 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
COL28A1Q2UY09 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.65□□□□□ -1.82
COL28A1Q2UY09 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.65□□□□□ -1.83
COL28A1Q2UY09 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL28A1Q2UY09 SNORA51.2-201ENST00000364595 132 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 RNA5SP51-201ENST00000364750 119 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 RNU6-1074P-201ENST00000383995 104 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
COL28A1Q2UY09 RNU6-882P-201ENST00000391025 103 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 AC078974.1-201ENST00000411597 223 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 BTF3L4P1-201ENST00000413813 468 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.65□□□□□ -1.83
COL28A1Q2UY09 AL159169.1-201ENST00000421119 127 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 AC233728.2-201ENST00000425348 757 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 DUTP6-201ENST00000425573 462 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.65□□□□□ -1.83
COL28A1Q2UY09 BX890604.2-201ENST00000427883 474 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.65□□□□□ -1.83
COL28A1Q2UY09 THAP5P1-201ENST00000439089 262 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 AL049734.2-201ENST00000441066 616 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.65□□□□□ -1.83
COL28A1Q2UY09 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.65□□□□□ -1.83
COL28A1Q2UY09 DNAJC19P1-201ENST00000455312 319 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 SNORD42A-201ENST00000459584 64 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 RPL21P10-201ENST00000463521 490 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 RPL7P24-201ENST00000493052 752 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC3.65□□□□□ -1.83
COL28A1Q2UY09 CBX3P3-201ENST00000508108 532 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.65□□□□□ -1.83
COL28A1Q2UY09 AF131216.2-201ENST00000512316 564 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC3.65□□□□□ -1.83
COL28A1Q2UY09 RNU6-1231P-201ENST00000517185 103 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 AP002748.2-201ENST00000528671 348 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
COL28A1Q2UY09 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.65□□□□□ -1.83
COL28A1Q2UY09 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.65□□□□□ -1.83
COL28A1Q2UY09 EIF4BP1-201ENST00000554881 351 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 GNRHR2P1-201ENST00000555315 631 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 NCAPGP2-201ENST00000557911 754 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.65□□□□□ -1.83
COL28A1Q2UY09 OR4K8P-201ENST00000578842 1048 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 MIR548AB-201ENST00000584917 84 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 AC005771.1-201ENST00000585581 349 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 RSL24D1P11-201ENST00000591045 491 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.65□□□□□ -1.83
COL28A1Q2UY09 AL158211.4-201ENST00000606988 584 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.65□□□□□ -1.83
COL28A1Q2UY09 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
COL28A1Q2UY09 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.65□□□□□ -1.83
COL28A1Q2UY09 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL28A1Q2UY09 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.65□□□□□ -1.83
COL28A1Q2UY09 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.64□□□□□ -1.83
COL28A1Q2UY09 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL28A1Q2UY09 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.64□□□□□ -1.83
COL28A1Q2UY09 AL138713.1-201ENST00000624026 2130 ntBASIC3.64□□□□□ -1.83
COL28A1Q2UY09 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL28A1Q2UY09 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL28A1Q2UY09 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.64□□□□□ -1.83
COL28A1Q2UY09 TAB3P1-202ENST00000452645 1634 ntBASIC3.64□□□□□ -1.83
COL28A1Q2UY09 RNU1-18P-201ENST00000363062 164 ntBASIC3.64□□□□□ -1.83
COL28A1Q2UY09 U1.1-201ENST00000384101 164 ntBASIC3.64□□□□□ -1.83
COL28A1Q2UY09 RNU6-754P-201ENST00000391166 107 ntBASIC3.64□□□□□ -1.83
COL28A1Q2UY09 UBA52P6-201ENST00000399822 382 ntBASIC3.64□□□□□ -1.83
COL28A1Q2UY09 RNU2-43P-201ENST00000410306 190 ntBASIC3.64□□□□□ -1.83
COL28A1Q2UY09 HMGN1P14-201ENST00000412459 517 ntBASIC3.64□□□□□ -1.83
COL28A1Q2UY09 MTCO1P39-201ENST00000426148 480 ntBASIC3.64□□□□□ -1.83
COL28A1Q2UY09 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.64□□□□□ -1.83
COL28A1Q2UY09 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.64□□□□□ -1.83
COL28A1Q2UY09 AL353706.1-201ENST00000436728 494 ntBASIC3.64□□□□□ -1.83
COL28A1Q2UY09 RPL35AP22-201ENST00000436855 335 ntBASIC3.64□□□□□ -1.83
COL28A1Q2UY09 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.64□□□□□ -1.83
COL28A1Q2UY09 AC234775.1-201ENST00000454247 670 ntBASIC3.64□□□□□ -1.83
COL28A1Q2UY09 SNRPGP5-201ENST00000456003 220 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms