Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC4.17□□□□□ -1.74
COL4A3Q01955 AL356432.3-201ENST00000568952 465 ntBASIC4.17□□□□□ -1.74
COL4A3Q01955 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.17□□□□□ -1.74
COL4A3Q01955 MIR3922-201ENST00000585192 84 ntBASIC4.17□□□□□ -1.74
COL4A3Q01955 AC008737.2-201ENST00000599446 118 ntBASIC4.17□□□□□ -1.74
COL4A3Q01955 AC244505.7-201ENST00000599675 272 ntBASIC4.17□□□□□ -1.74
COL4A3Q01955 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.17□□□□□ -1.74
COL4A3Q01955 AC009318.4-201ENST00000620496 486 ntBASIC4.17□□□□□ -1.74
COL4A3Q01955 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.17□□□□□ -1.74
COL4A3Q01955 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC4.17□□□□□ -1.74
COL4A3Q01955 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.17□□□□□ -1.74
COL4A3Q01955 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL4A3Q01955 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL4A3Q01955 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.17□□□□□ -1.74
COL4A3Q01955 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.17□□□□□ -1.74
COL4A3Q01955 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL4A3Q01955 AC107081.3-201ENST00000612715 2034 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 RNY4P16-201ENST00000364768 94 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL4A3Q01955 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC4.16□□□□□ -1.74
COL4A3Q01955 RPL23AP25-201ENST00000430973 463 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.16□□□□□ -1.74
COL4A3Q01955 AC005008.1-201ENST00000456151 612 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 SNORD19B-201ENST00000459623 84 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 RPL23AP41-201ENST00000484754 458 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC4.16□□□□□ -1.74
COL4A3Q01955 RNU6-410P-201ENST00000517006 107 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 AC100770.1-201ENST00000532310 322 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 ELOCP31-201ENST00000540463 467 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.16□□□□□ -1.74
COL4A3Q01955 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC4.16□□□□□ -1.74
COL4A3Q01955 AC021646.1-201ENST00000605469 484 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 RNU6-89P-201ENST00000606519 100 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 AC103710.3-201ENST00000608157 948 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 MIR6868-201ENST00000611215 58 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 AC064801.1-201ENST00000612025 407 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 AC010205.1-201ENST00000616668 449 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 AC138305.3-201ENST00000624988 240 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 AL034408.1-202ENST00000636088 415 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
COL4A3Q01955 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL4A3Q01955 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL4A3Q01955 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC4.16□□□□□ -1.74
COL4A3Q01955 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL4A3Q01955 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL4A3Q01955 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL4A3Q01955 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL4A3Q01955 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL4A3Q01955 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL4A3Q01955 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL4A3Q01955 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC4.16□□□□□ -1.74
COL4A3Q01955 AC058791.1-201ENST00000608412 3198 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.16□□□□□ -1.74
COL4A3Q01955 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL4A3Q01955 AC073343.1-201ENST00000328239 651 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 MIR369-201ENST00000362155 70 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 Y_RNA.145-201ENST00000363527 102 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 Y_RNA.184-201ENST00000363884 108 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 SNORD42.2-201ENST00000365570 69 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL4A3Q01955 RNU6-43P-201ENST00000384302 107 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 SNORD3H-201ENST00000384486 214 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 RNU6-606P-201ENST00000384721 111 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 RPL7P60-201ENST00000397636 735 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 DSTNP4-201ENST00000399472 474 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC4.16□□□□□ -1.74
COL4A3Q01955 RN7SKP284-201ENST00000411002 343 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 VDAC1P9-201ENST00000412766 841 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC4.16□□□□□ -1.74
COL4A3Q01955 MTCO2P27-201ENST00000420740 428 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 AL645937.1-202ENST00000421799 937 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL4A3Q01955 AC005297.2-201ENST00000450430 606 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC4.16□□□□□ -1.74
COL4A3Q01955 Y_RNA.631-201ENST00000459607 101 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC4.16□□□□□ -1.74
COL4A3Q01955 AC090096.1-201ENST00000489168 390 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 TXNP6-201ENST00000510190 310 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 TTC39CP1-201ENST00000512513 755 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 RNA5SP337-201ENST00000517007 109 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 AC087369.1-201ENST00000520775 996 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL4A3Q01955 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC4.16□□□□□ -1.74
COL4A3Q01955 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.16□□□□□ -1.74
COL4A3Q01955 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.16□□□□□ -1.74
COL4A3Q01955 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC4.16□□□□□ -1.74
COL4A3Q01955 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.16□□□□□ -1.74
COL4A3Q01955 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.16□□□□□ -1.74
COL4A3Q01955 AL391261.4-201ENST00000616012 481 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 MIR6852-201ENST00000621699 66 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 CYP3A51P-201ENST00000633513 256 ntBASIC4.16□□□□□ -1.74
COL4A3Q01955 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.16□□□□□ -1.74
COL4A3Q01955 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.16□□□□□ -1.74
COL4A3Q01955 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.74
COL4A3Q01955 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
COL4A3Q01955 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
COL4A3Q01955 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.74
COL4A3Q01955 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.15□□□□□ -1.74
COL4A3Q01955 MTND5P16-201ENST00000460269 1703 ntBASIC4.15□□□□□ -1.74
COL4A3Q01955 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms