Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 AL356266.1-201ENST00000623311 483 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXC9P31274 PCMTD1P7-201ENST00000634506 357 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 AC099063.3-201ENST00000642066 185 ntBASIC3.88□□□□□ -1.79
HOXC9P31274 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXC9P31274 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXC9P31274 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXC9P31274 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXC9P31274 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXC9P31274 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXC9P31274 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXC9P31274 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.87□□□□□ -1.79
HOXC9P31274 SAGE4P-201ENST00000442271 3381 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.87□□□□□ -1.79
HOXC9P31274 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXC9P31274 RNU6-433P-201ENST00000363216 104 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 RNU6-730P-201ENST00000383954 104 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 RNU6-356P-201ENST00000384140 107 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 RNU6-339P-201ENST00000384310 107 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 AL031679.1-201ENST00000400616 525 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 SKINT1L-201ENST00000401057 817 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 MTND4LP20-201ENST00000402379 270 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 AL355379.1-201ENST00000405542 640 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXC9P31274 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXC9P31274 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXC9P31274 FNDC3CP-201ENST00000420795 1155 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 PSMA6P3-201ENST00000428242 164 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 AL590399.6-201ENST00000446396 307 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 AL162389.1-201ENST00000449233 177 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 NIPA2P5-201ENST00000452282 464 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXC9P31274 RPS27AP8-201ENST00000452665 445 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXC9P31274 BX322784.1-201ENST00000455793 1077 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 SNRPGP5-201ENST00000456003 220 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 ALDH7A1P3-201ENST00000492517 345 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 OR5H5P-201ENST00000503164 928 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.87□□□□□ -1.79
HOXC9P31274 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXC9P31274 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXC9P31274 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXC9P31274 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HOXC9P31274 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXC9P31274 AC107016.2-201ENST00000547968 190 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 AC011260.1-201ENST00000578420 472 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.87□□□□□ -1.79
HOXC9P31274 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXC9P31274 AC008443.7-201ENST00000622195 246 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXC9P31274 C2orf27A-204ENST00000623058 969 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 AC006065.5-201ENST00000623427 349 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXC9P31274 MTCO1P24-201ENST00000515438 1558 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXC9P31274 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
HOXC9P31274 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXC9P31274 DDX43P2-201ENST00000604753 1354 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 NUP58P1-201ENST00000502546 1738 ntBASIC3.87□□□□□ -1.79
HOXC9P31274 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXC9P31274 XIAPP3-201ENST00000312918 795 ntBASIC3.86□□□□□ -1.79
HOXC9P31274 RNU6-462P-201ENST00000362659 105 ntBASIC3.86□□□□□ -1.79
HOXC9P31274 RNU6-777P-201ENST00000364265 104 ntBASIC3.86□□□□□ -1.79
HOXC9P31274 RNU4-40P-201ENST00000364351 143 ntBASIC3.86□□□□□ -1.79
HOXC9P31274 RNU6-952P-201ENST00000391164 108 ntBASIC3.86□□□□□ -1.79
HOXC9P31274 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXC9P31274 OFD1P18Y-201ENST00000420889 959 ntBASIC3.86□□□□□ -1.79
HOXC9P31274 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXC9P31274 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXC9P31274 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
HOXC9P31274 ZNF114P1-201ENST00000453500 292 ntBASIC3.86□□□□□ -1.79
HOXC9P31274 AL122001.1-201ENST00000457027 370 ntBASIC3.86□□□□□ -1.79
HOXC9P31274 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.86□□□□□ -1.79
HOXC9P31274 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXC9P31274 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXC9P31274 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXC9P31274 WISP1-OT1-201ENST00000602893 642 ntBASIC3.86□□□□□ -1.79
HOXC9P31274 AC004825.2-201ENST00000616634 455 ntBASIC3.86□□□□□ -1.79
HOXC9P31274 RPS4XP5-202ENST00000449995 1334 ntBASIC3.86□□□□□ -1.79
HOXC9P31274 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
HOXC9P31274 MTND4P16-201ENST00000466108 1367 ntBASIC3.86□□□□□ -1.79
HOXC9P31274 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXC9P31274 RNU6-500P-201ENST00000362349 107 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXC9P31274 AL360182.1-201ENST00000397433 468 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 AL031577.2-201ENST00000404133 280 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 U3.42-201ENST00000408746 214 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXC9P31274 RNU4-78P-201ENST00000410940 126 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 RNA5SP107-201ENST00000411358 122 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 RHEBP3-201ENST00000411920 351 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 TPMTP2-201ENST00000414372 726 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 RPL32P35-201ENST00000415214 394 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXC9P31274 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXC9P31274 UBE2FP3-201ENST00000436366 524 ntBASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms