Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 COX6CP12-201ENST00000446748 202 ntBASIC1.66□□□□□ -2.14
COL6A3P12111 SEPT7P3-201ENST00000455017 621 ntBASIC1.66□□□□□ -2.14
COL6A3P12111 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC1.66□□□□□ -2.14
COL6A3P12111 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
COL6A3P12111 AC034102.8-201ENST00000615146 484 ntBASIC1.66□□□□□ -2.14
COL6A3P12111 AC092159.4-201ENST00000624944 550 ntBASIC1.66□□□□□ -2.14
COL6A3P12111 PWAR6-201ENST00000552334 4618 ntBASIC1.66□□□□□ -2.14
COL6A3P12111 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC1.65□□□□□ -2.14
COL6A3P12111 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC1.65□□□□□ -2.14
COL6A3P12111 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC1.65□□□□□ -2.14
COL6A3P12111 AC024614.2-201ENST00000577584 372 ntBASIC1.65□□□□□ -2.14
COL6A3P12111 AL449363.1-201ENST00000617815 186 ntBASIC1.65□□□□□ -2.14
COL6A3P12111 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC1.65□□□□□ -2.14
COL6A3P12111 NF1-214ENST00000490416 1329 ntTSL 3 BASIC1.65□□□□□ -2.14
COL6A3P12111 MFF-206ENST00000392059 1710 ntTSL 5 BASIC1.65□□□□□ -2.14
COL6A3P12111 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC1.65□□□□□ -2.14
COL6A3P12111 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC1.65□□□□□ -2.15
COL6A3P12111 RNU4-91P-201ENST00000364778 135 ntBASIC1.65□□□□□ -2.15
COL6A3P12111 AC093084.1-201ENST00000424233 687 ntBASIC1.65□□□□□ -2.15
COL6A3P12111 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.65□□□□□ -2.15
COL6A3P12111 RPS15AP1-201ENST00000457423 391 ntBASIC1.65□□□□□ -2.15
COL6A3P12111 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC1.65□□□□□ -2.15
COL6A3P12111 AC034268.2-201ENST00000571784 482 ntBASIC1.65□□□□□ -2.15
COL6A3P12111 AC009314.1-201ENST00000603871 304 ntBASIC1.65□□□□□ -2.15
COL6A3P12111 AC009541.1-201ENST00000438279 2662 ntBASIC1.65□□□□□ -2.15
COL6A3P12111 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC1.65□□□□□ -2.15
COL6A3P12111 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
COL6A3P12111 RNU6ATAC16P-201ENST00000408591 138 ntBASIC1.65□□□□□ -2.15
COL6A3P12111 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC1.65□□□□□ -2.15
COL6A3P12111 AC073310.1-201ENST00000423226 1033 ntBASIC1.65□□□□□ -2.15
COL6A3P12111 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.65□□□□□ -2.15
COL6A3P12111 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC1.65□□□□□ -2.15
COL6A3P12111 SUB1P4-201ENST00000566062 339 ntBASIC1.65□□□□□ -2.15
COL6A3P12111 VN1R79P-201ENST00000593540 513 ntBASIC1.65□□□□□ -2.15
COL6A3P12111 RN7SKP101-201ENST00000411376 320 ntBASIC1.64□□□□□ -2.15
COL6A3P12111 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.64□□□□□ -2.15
COL6A3P12111 AC114786.4-201ENST00000508771 728 ntBASIC1.64□□□□□ -2.15
COL6A3P12111 NDUFB4P9-201ENST00000511646 388 ntBASIC1.64□□□□□ -2.15
COL6A3P12111 AC114797.1-201ENST00000514003 728 ntBASIC1.64□□□□□ -2.15
COL6A3P12111 BNIP3P7-201ENST00000605641 516 ntBASIC1.64□□□□□ -2.15
COL6A3P12111 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
COL6A3P12111 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
COL6A3P12111 Y_RNA.324-201ENST00000365165 102 ntBASIC1.64□□□□□ -2.15
COL6A3P12111 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC1.64□□□□□ -2.15
COL6A3P12111 KATNBL1P4-201ENST00000503545 918 ntBASIC1.64□□□□□ -2.15
COL6A3P12111 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC1.64□□□□□ -2.15
COL6A3P12111 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC1.64□□□□□ -2.15
COL6A3P12111 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC1.64□□□□□ -2.15
COL6A3P12111 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC1.64□□□□□ -2.15
COL6A3P12111 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC1.64□□□□□ -2.15
COL6A3P12111 AL512283.1-201ENST00000606756 1384 ntBASIC1.63□□□□□ -2.15
COL6A3P12111 RNA5SP363-201ENST00000365072 115 ntBASIC1.63□□□□□ -2.15
COL6A3P12111 BX510359.4-201ENST00000423750 193 ntBASIC1.63□□□□□ -2.15
COL6A3P12111 AL645568.3-201ENST00000433683 316 ntBASIC1.63□□□□□ -2.15
COL6A3P12111 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.63□□□□□ -2.15
COL6A3P12111 AL691517.1-201ENST00000440833 1235 ntBASIC1.63□□□□□ -2.15
COL6A3P12111 TPRKBP1-201ENST00000456243 481 ntBASIC1.63□□□□□ -2.15
COL6A3P12111 RNU6-1132P-201ENST00000459214 107 ntBASIC1.63□□□□□ -2.15
COL6A3P12111 AC099778.2-201ENST00000610904 211 ntBASIC1.63□□□□□ -2.15
COL6A3P12111 AL138955.1-201ENST00000622881 1040 ntBASIC1.63□□□□□ -2.15
COL6A3P12111 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC1.63□□□□□ -2.15
COL6A3P12111 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
COL6A3P12111 AC006026.1-201ENST00000444025 1803 ntBASIC1.63□□□□□ -2.15
COL6A3P12111 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC1.63□□□□□ -2.15
COL6A3P12111 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC1.63□□□□□ -2.15
COL6A3P12111 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC1.63□□□□□ -2.15
COL6A3P12111 MIR517C-201ENST00000385103 95 ntBASIC1.63□□□□□ -2.15
COL6A3P12111 AC129850.1-201ENST00000436203 508 ntBASIC1.63□□□□□ -2.15
COL6A3P12111 AL078601.1-201ENST00000444542 271 ntBASIC1.63□□□□□ -2.15
COL6A3P12111 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC1.63□□□□□ -2.15
COL6A3P12111 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC1.63□□□□□ -2.15
COL6A3P12111 AC021146.7-201ENST00000509604 775 ntBASIC1.63□□□□□ -2.15
COL6A3P12111 AC025263.3-201ENST00000622965 1396 ntBASIC1.63□□□□□ -2.15
COL6A3P12111 RNU6-105P-201ENST00000363909 104 ntBASIC1.63□□□□□ -2.15
COL6A3P12111 U3.15-201ENST00000365398 212 ntBASIC1.63□□□□□ -2.15
COL6A3P12111 AC005297.2-201ENST00000450430 606 ntBASIC1.63□□□□□ -2.15
COL6A3P12111 CD69-203ENST00000536709 1020 ntTSL 2 BASIC1.63□□□□□ -2.15
COL6A3P12111 TRAV28-201ENST00000557548 323 ntBASIC1.63□□□□□ -2.15
COL6A3P12111 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC1.63□□□□□ -2.15
COL6A3P12111 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC1.62□□□□□ -2.15
COL6A3P12111 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.62□□□□□ -2.15
COL6A3P12111 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.62□□□□□ -2.15
COL6A3P12111 Y_RNA.132-201ENST00000363421 102 ntBASIC1.62□□□□□ -2.15
COL6A3P12111 RNY3-201ENST00000365484 102 ntBASIC1.62□□□□□ -2.15
COL6A3P12111 AIMP1P2-201ENST00000425294 312 ntBASIC1.62□□□□□ -2.15
COL6A3P12111 AL513185.2-201ENST00000425543 193 ntBASIC1.62□□□□□ -2.15
COL6A3P12111 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC1.62□□□□□ -2.15
COL6A3P12111 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.62□□□□□ -2.15
COL6A3P12111 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.62□□□□□ -2.15
COL6A3P12111 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC1.62□□□□□ -2.15
COL6A3P12111 AC092451.2-201ENST00000538746 658 ntBASIC1.62□□□□□ -2.15
COL6A3P12111 BNIP3P4-201ENST00000604946 565 ntBASIC1.62□□□□□ -2.15
COL6A3P12111 AC098679.5-201ENST00000624394 571 ntBASIC1.62□□□□□ -2.15
COL6A3P12111 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC1.62□□□□□ -2.15
COL6A3P12111 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC1.62□□□□□ -2.15
COL6A3P12111 AC138649.5-201ENST00000637456 137 ntBASIC1.62□□□□□ -2.15
COL6A3P12111 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
COL6A3P12111 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.62□□□□□ -2.15
COL6A3P12111 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
COL6A3P12111 RNA5SP160-201ENST00000364866 120 ntBASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms