Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC114781.5-201ENST00000615297 108 ntBASIC4.55□□□□□ -1.68
CBX4O00257 AL589994.2-201ENST00000621124 579 ntBASIC4.55□□□□□ -1.68
CBX4O00257 AC010338.1-201ENST00000621823 717 ntBASIC4.55□□□□□ -1.68
CBX4O00257 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.55□□□□□ -1.68
CBX4O00257 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
CBX4O00257 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.55□□□□□ -1.68
CBX4O00257 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CBX4O00257 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CBX4O00257 MTND4P14-201ENST00000435799 1354 ntBASIC4.54□□□□□ -1.68
CBX4O00257 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CBX4O00257 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.54□□□□□ -1.68
CBX4O00257 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.54□□□□□ -1.68
CBX4O00257 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.54□□□□□ -1.68
CBX4O00257 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
CBX4O00257 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CBX4O00257 RNU6-552P-201ENST00000362869 119 ntBASIC4.54□□□□□ -1.68
CBX4O00257 SNORA57.1-201ENST00000391227 145 ntBASIC4.54□□□□□ -1.68
CBX4O00257 AL606923.1-201ENST00000406616 190 ntBASIC4.54□□□□□ -1.68
CBX4O00257 RN7SKP263-201ENST00000411194 309 ntBASIC4.54□□□□□ -1.68
CBX4O00257 RNU6-387P-201ENST00000411331 105 ntBASIC4.54□□□□□ -1.68
CBX4O00257 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.54□□□□□ -1.68
CBX4O00257 RPS20P14-201ENST00000412545 360 ntBASIC4.54□□□□□ -1.68
CBX4O00257 AC244098.2-201ENST00000422068 99 ntBASIC4.54□□□□□ -1.68
CBX4O00257 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4.54□□□□□ -1.68
CBX4O00257 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC4.54□□□□□ -1.68
CBX4O00257 SLC25A15P5-201ENST00000508033 253 ntBASIC4.54□□□□□ -1.68
CBX4O00257 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC4.54□□□□□ -1.68
CBX4O00257 AP004371.1-201ENST00000525240 214 ntBASIC4.54□□□□□ -1.68
CBX4O00257 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.54□□□□□ -1.68
CBX4O00257 CYCSP29-201ENST00000533731 318 ntBASIC4.54□□□□□ -1.68
CBX4O00257 AC005261.5-201ENST00000596280 355 ntBASIC4.54□□□□□ -1.68
CBX4O00257 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.54□□□□□ -1.68
CBX4O00257 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.54□□□□□ -1.68
CBX4O00257 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CBX4O00257 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
CBX4O00257 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CBX4O00257 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CBX4O00257 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
CBX4O00257 AL136964.1-201ENST00000622038 2990 ntBASIC4.53□□□□□ -1.68
CBX4O00257 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CBX4O00257 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CBX4O00257 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CBX4O00257 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
CBX4O00257 RNA5SP388-201ENST00000362584 119 ntBASIC4.53□□□□□ -1.68
CBX4O00257 Y_RNA.61-201ENST00000362835 102 ntBASIC4.53□□□□□ -1.68
CBX4O00257 Y_RNA.263-201ENST00000364659 114 ntBASIC4.53□□□□□ -1.68
CBX4O00257 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CBX4O00257 SNORA24.1-201ENST00000384401 135 ntBASIC4.53□□□□□ -1.68
CBX4O00257 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
CBX4O00257 RNU6-332P-201ENST00000391193 108 ntBASIC4.53□□□□□ -1.68
CBX4O00257 RNU6-903P-201ENST00000391270 109 ntBASIC4.53□□□□□ -1.68
CBX4O00257 AL162578.1-201ENST00000406202 378 ntBASIC4.53□□□□□ -1.68
CBX4O00257 AC114491.1-201ENST00000416095 246 ntBASIC4.53□□□□□ -1.68
CBX4O00257 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.53□□□□□ -1.68
CBX4O00257 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC4.53□□□□□ -1.68
CBX4O00257 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.53□□□□□ -1.68
CBX4O00257 PHBP16-201ENST00000446318 950 ntBASIC4.53□□□□□ -1.68
CBX4O00257 UBE2V1P7-201ENST00000446395 340 ntBASIC4.53□□□□□ -1.68
CBX4O00257 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC4.53□□□□□ -1.68
CBX4O00257 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.53□□□□□ -1.68
CBX4O00257 AC022795.1-201ENST00000473808 480 ntBASIC4.53□□□□□ -1.68
CBX4O00257 AC012158.1-204ENST00000483430 465 ntBASIC4.53□□□□□ -1.68
CBX4O00257 VN1R104P-201ENST00000505115 1009 ntBASIC4.53□□□□□ -1.68
CBX4O00257 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CBX4O00257 AC004062.1-201ENST00000509926 645 ntBASIC4.53□□□□□ -1.68
CBX4O00257 AC108078.2-201ENST00000510750 236 ntBASIC4.53□□□□□ -1.68
CBX4O00257 SNORA31.9-201ENST00000516429 84 ntBASIC4.53□□□□□ -1.68
CBX4O00257 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC4.53□□□□□ -1.68
CBX4O00257 RAB11AP2-201ENST00000545905 639 ntBASIC4.53□□□□□ -1.68
CBX4O00257 AC007424.1-203ENST00000554613 687 ntBASIC4.53□□□□□ -1.68
CBX4O00257 OR4H12P-201ENST00000556269 907 ntBASIC4.53□□□□□ -1.68
CBX4O00257 AL138976.2-201ENST00000563989 694 ntBASIC4.53□□□□□ -1.68
CBX4O00257 MIR4703-201ENST00000577728 79 ntBASIC4.53□□□□□ -1.68
CBX4O00257 MIR4719-201ENST00000585233 84 ntBASIC4.53□□□□□ -1.68
CBX4O00257 AC006116.10-201ENST00000591836 581 ntBASIC4.53□□□□□ -1.68
CBX4O00257 AC091979.2-201ENST00000607514 214 ntBASIC4.53□□□□□ -1.68
CBX4O00257 AC093913.1-201ENST00000614178 329 ntBASIC4.53□□□□□ -1.68
CBX4O00257 AP001486.3-201ENST00000615334 372 ntBASIC4.53□□□□□ -1.68
CBX4O00257 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC4.53□□□□□ -1.68
CBX4O00257 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC4.53□□□□□ -1.68
CBX4O00257 AL137003.2-201ENST00000606924 2538 ntBASIC4.53□□□□□ -1.68
CBX4O00257 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.53□□□□□ -1.68
CBX4O00257 AC074029.4-201ENST00000624796 1859 ntBASIC4.53□□□□□ -1.68
CBX4O00257 TAB3P1-202ENST00000452645 1634 ntBASIC4.53□□□□□ -1.68
CBX4O00257 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CBX4O00257 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
CBX4O00257 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CBX4O00257 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.52□□□□□ -1.69
CBX4O00257 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
CBX4O00257 API5P2-201ENST00000397055 1498 ntBASIC4.52□□□□□ -1.69
CBX4O00257 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
CBX4O00257 RNU6-845P-201ENST00000362578 103 ntBASIC4.52□□□□□ -1.69
CBX4O00257 RNU6-1287P-201ENST00000362914 107 ntBASIC4.52□□□□□ -1.69
CBX4O00257 RNU6-694P-201ENST00000364071 147 ntBASIC4.52□□□□□ -1.69
CBX4O00257 RNU6-173P-201ENST00000364215 104 ntBASIC4.52□□□□□ -1.69
CBX4O00257 Y_RNA.231-201ENST00000364358 102 ntBASIC4.52□□□□□ -1.69
CBX4O00257 RNA5SP235-201ENST00000365411 114 ntBASIC4.52□□□□□ -1.69
CBX4O00257 RNA5SP151-201ENST00000365632 117 ntBASIC4.52□□□□□ -1.69
CBX4O00257 RNU6-1060P-201ENST00000384664 107 ntBASIC4.52□□□□□ -1.69
CBX4O00257 MIR134-201ENST00000385258 73 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms