Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 SNORA70.16-201ENST00000516390 95 ntBASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 COX6CP8-201ENST00000522620 226 ntBASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 EIF4BP1-201ENST00000554881 351 ntBASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 AC027807.1-201ENST00000559921 996 ntBASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 MTCO3P24-201ENST00000572729 782 ntBASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 AC099489.2-201ENST00000574976 260 ntBASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 AC011260.1-201ENST00000578420 472 ntBASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 LARP7P3-201ENST00000579888 337 ntBASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 MIR4276-201ENST00000584832 70 ntBASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 AL353997.4-201ENST00000586196 166 ntBASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 BBIP1P1-201ENST00000602999 279 ntBASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 AL031281.1-201ENST00000604049 488 ntBASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 AP000676.4-201ENST00000624659 623 ntBASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 AC079228.1-201ENST00000624774 1049 ntBASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
PCDHGA1Q9Y5H4 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
PCDHGA1Q9Y5H4 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.34□□□□□ -1.88
PCDHGA1Q9Y5H4 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
PCDHGA1Q9Y5H4 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 AC007496.3-201ENST00000624987 3443 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 FRG1CP-201ENST00000358464 769 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 MIR493-201ENST00000385254 89 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 HSPE1P8-201ENST00000406997 288 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 U3.39-201ENST00000408569 239 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 AC010099.3-201ENST00000423896 409 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 AC234781.2-201ENST00000426370 994 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 MEMO1P3-201ENST00000459811 302 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 RPL23AP14-201ENST00000468281 468 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 UBE2DNL-203ENST00000474922 222 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 RPS3AP43-201ENST00000479743 781 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 AC011825.1-201ENST00000484967 388 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 RPL23AP94-201ENST00000512518 302 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 HMGN1P28-201ENST00000521340 364 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 AC005951.1-201ENST00000576706 485 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 OR4K8P-201ENST00000578842 1048 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 BRDTP1-201ENST00000605735 677 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 AL162274.2-201ENST00000614406 332 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 AC002550.2-201ENST00000621246 394 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 AL159972.1-201ENST00000625150 448 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 FAM35BP-202ENST00000497389 3337 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 CR381670.1-201ENST00000624291 1693 ntBASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PCDHGA1Q9Y5H4 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 MTND4P13-201ENST00000402078 1023 ntBASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 RPS29P31-201ENST00000446147 164 ntBASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 AL671855.1-201ENST00000446875 1203 ntBASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 AC002381.1-201ENST00000447049 280 ntBASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 SNORD121B-201ENST00000458838 81 ntBASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 AP002884.2-201ENST00000471647 395 ntBASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 AC068724.1-201ENST00000487100 792 ntBASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 Y_RNA.717-201ENST00000517106 92 ntBASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 OR6C7P-201ENST00000547875 934 ntBASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 AC004024.1-201ENST00000549244 247 ntBASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 MIR4999-201ENST00000585029 91 ntBASIC3.32□□□□□ -1.88
PCDHGA1Q9Y5H4 AC105224.1-201ENST00000587055 421 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 127.7 ms