Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
AP4E1Q9UPM8 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.12□□□□□ -1.59
AP4E1Q9UPM8 AC009643.2-201ENST00000603543 1448 ntBASIC5.12□□□□□ -1.59
AP4E1Q9UPM8 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.12□□□□□ -1.59
AP4E1Q9UPM8 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
AP4E1Q9UPM8 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 AL031119.1-201ENST00000404707 1879 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 RNA5SP305-201ENST00000362665 119 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 RNU6-1284P-201ENST00000363701 100 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 Y_RNA.389-201ENST00000383924 113 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 RNU6-432P-201ENST00000384196 109 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 SNORD51-201ENST00000384320 80 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 Y_RNA.512-201ENST00000384518 102 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 AL109755.1-201ENST00000401791 649 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 RNA5SP296-201ENST00000410523 111 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 RNU6-516P-201ENST00000411381 104 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 RPL31P2-201ENST00000413849 377 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 AL139095.3-201ENST00000419672 1203 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 RPL35AP22-201ENST00000436855 335 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 HIGD1AP11-201ENST00000438361 280 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 AC000111.2-201ENST00000448200 210 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 CEACAMP4-201ENST00000457676 421 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 RNU7-167P-201ENST00000459160 62 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 RN7SL517P-201ENST00000462240 305 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 RN7SL97P-201ENST00000486780 299 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 AC004453.1-201ENST00000487895 408 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 AC140172.1-201ENST00000502928 141 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 MRPS33P2-201ENST00000507850 322 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 RFPL4AP5-201ENST00000514977 504 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 RNU6-120P-201ENST00000516077 103 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 Y_RNA.721-201ENST00000517207 102 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 AP000827.1-201ENST00000527814 258 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 AC106782.4-201ENST00000568264 210 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 MIR3941-201ENST00000582572 103 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 AC087783.2-201ENST00000605070 562 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 AC015914.2-201ENST00000618167 288 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 U2.1-201ENST00000618978 145 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 AC091925.2-201ENST00000625059 256 ntBASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.11□□□□□ -1.59
AP4E1Q9UPM8 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 RNU6-450P-201ENST00000364654 107 ntBASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 SMIM11P1-201ENST00000369586 178 ntBASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 SNORD70.1-201ENST00000391007 85 ntBASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 AL357515.1-201ENST00000402967 542 ntBASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 RPL23AP27-201ENST00000415161 451 ntBASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 GABPAP-201ENST00000419271 1356 ntBASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 AC243428.1-201ENST00000421099 264 ntBASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 SOCS5P3-201ENST00000425115 1576 ntBASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 USMG5P1-201ENST00000425964 177 ntBASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 AL353597.2-202ENST00000434901 373 ntBASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 AC053481.1-201ENST00000467217 306 ntBASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 RN7SL432P-201ENST00000484057 298 ntBASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 RPL23AP55-201ENST00000498163 452 ntBASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 RNU6-475P-201ENST00000516073 104 ntBASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 RNU6-513P-201ENST00000516104 104 ntBASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 SNORD116.3-201ENST00000517176 78 ntBASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 RNU1-54P-201ENST00000517181 120 ntBASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 AC027308.1-201ENST00000517993 110 ntBASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
AP4E1Q9UPM8 AC100870.1-201ENST00000522035 505 ntBASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms