Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 AC055876.1-202ENST00000567053 138 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 MTCO3P24-201ENST00000572729 782 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 BDH2P1-201ENST00000602288 736 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 AC090115.4-201ENST00000609970 188 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 AL050303.3-201ENST00000613704 284 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 AC006386.1-201ENST00000619436 415 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.26□□□□□ -1.89
VPS54Q9P1Q0 SGO1P2-201ENST00000429458 1589 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 Y_RNA.311-201ENST00000365068 96 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 AL591034.1-201ENST00000407447 340 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 RNU4-65P-201ENST00000410473 140 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 RPL7P46-201ENST00000425129 740 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 RPS20P5-201ENST00000434808 360 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 COX7BP2-201ENST00000437976 242 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 AL606517.1-201ENST00000446914 387 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 Z82190.1-201ENST00000454534 490 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 AC091179.1-201ENST00000461606 579 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 AC003982.1-202ENST00000469928 248 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 AC021146.8-201ENST00000507455 733 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 HIGD1AP13-201ENST00000509878 289 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 AC105914.1-201ENST00000511798 226 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 AC109445.1-201ENST00000512356 383 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 SETP7-201ENST00000552169 453 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 VN1R78P-201ENST00000597393 564 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 AL450336.1-201ENST00000605180 586 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 AC080013.3-201ENST00000606839 578 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 AL110115.1-201ENST00000614396 364 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 AC013470.4-201ENST00000619978 986 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 AL356585.4-201ENST00000623078 1229 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 AL137790.1-201ENST00000634283 177 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 AC090897.3-201ENST00000636973 1157 ntBASIC3.25□□□□□ -1.89
VPS54Q9P1Q0 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 MTATP6P27-201ENST00000416987 621 ntBASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 MTCYBP45-201ENST00000435243 565 ntBASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 MUPP-201ENST00000438111 566 ntBASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 TRIM60P18-201ENST00000441518 828 ntBASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 FGF7P5-201ENST00000441829 291 ntBASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 AC093392.2-201ENST00000450682 337 ntBASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 AL353691.1-201ENST00000451332 387 ntBASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 MTCO3P11-201ENST00000455103 774 ntBASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 AC108729.1-201ENST00000487812 947 ntBASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 AC006499.2-201ENST00000513470 337 ntBASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 RNU6-711P-201ENST00000517255 106 ntBASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 AC022662.1-201ENST00000580252 331 ntBASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 AP001029.3-201ENST00000588063 596 ntBASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 AC091057.2-201ENST00000602594 792 ntBASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 AC080013.4-201ENST00000607624 649 ntBASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 AC010338.1-201ENST00000621823 717 ntBASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 AC006111.3-201ENST00000622137 383 ntBASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
VPS54Q9P1Q0 AC097714.1-201ENST00000511272 1647 ntBASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 RPL23AP29-201ENST00000397284 453 ntBASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 AL031679.1-201ENST00000400616 525 ntBASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 AL592310.1-201ENST00000414330 671 ntBASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 UBE2D3P2-201ENST00000424409 445 ntBASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 MTCO2P20-201ENST00000437339 673 ntBASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 MTND4P6-201ENST00000438297 472 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 135.1 ms