Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC1.84□□□□□ -2.11
SCN3AQ9NY46 AC027124.2-201ENST00000428249 105 ntBASIC1.84□□□□□ -2.11
SCN3AQ9NY46 FO393419.3-201ENST00000428741 282 ntBASIC1.84□□□□□ -2.11
SCN3AQ9NY46 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC1.84□□□□□ -2.11
SCN3AQ9NY46 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC1.84□□□□□ -2.11
SCN3AQ9NY46 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC1.84□□□□□ -2.11
SCN3AQ9NY46 BLNK-209ENST00000495266 440 ntTSL 5 BASIC1.84□□□□□ -2.11
SCN3AQ9NY46 AC116337.1-201ENST00000509680 687 ntBASIC1.84□□□□□ -2.11
SCN3AQ9NY46 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC1.84□□□□□ -2.11
SCN3AQ9NY46 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC1.84□□□□□ -2.11
SCN3AQ9NY46 MGST1-215ENST00000540056 546 ntTSL 3 BASIC1.84□□□□□ -2.11
SCN3AQ9NY46 AC126177.3-201ENST00000551839 688 ntBASIC1.84□□□□□ -2.11
SCN3AQ9NY46 EIF1AXP2-201ENST00000555940 413 ntBASIC1.84□□□□□ -2.11
SCN3AQ9NY46 NRBF2P1-201ENST00000587407 859 ntBASIC1.84□□□□□ -2.11
SCN3AQ9NY46 AC008739.2-201ENST00000597006 317 ntBASIC1.84□□□□□ -2.11
SCN3AQ9NY46 AC091057.2-201ENST00000602594 792 ntBASIC1.84□□□□□ -2.11
SCN3AQ9NY46 NTAN1P1-201ENST00000603150 646 ntBASIC1.84□□□□□ -2.11
SCN3AQ9NY46 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC1.84□□□□□ -2.11
SCN3AQ9NY46 AC103798.2-201ENST00000624292 632 ntBASIC1.84□□□□□ -2.11
SCN3AQ9NY46 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC1.84□□□□□ -2.11
SCN3AQ9NY46 AC241585.2-209ENST00000638217 143 ntBASIC1.84□□□□□ -2.11
SCN3AQ9NY46 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC1.84□□□□□ -2.11
SCN3AQ9NY46 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
SCN3AQ9NY46 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
SCN3AQ9NY46 MIR9-3-201ENST00000385084 90 ntBASIC1.84□□□□□ -2.12
SCN3AQ9NY46 U8.13-201ENST00000390842 128 ntBASIC1.84□□□□□ -2.12
SCN3AQ9NY46 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.84□□□□□ -2.12
SCN3AQ9NY46 BX682237.1-201ENST00000415016 335 ntBASIC1.84□□□□□ -2.12
SCN3AQ9NY46 RPL7P30-201ENST00000420888 709 ntBASIC1.84□□□□□ -2.12
SCN3AQ9NY46 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC1.84□□□□□ -2.12
SCN3AQ9NY46 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC1.84□□□□□ -2.12
SCN3AQ9NY46 AC104689.1-201ENST00000473356 768 ntBASIC1.84□□□□□ -2.12
SCN3AQ9NY46 AC105914.1-201ENST00000511798 226 ntBASIC1.84□□□□□ -2.12
SCN3AQ9NY46 MTND2P26-201ENST00000528255 1029 ntBASIC1.84□□□□□ -2.12
SCN3AQ9NY46 OSBPL9P3-201ENST00000534523 595 ntBASIC1.84□□□□□ -2.12
SCN3AQ9NY46 AMZ2P1-203ENST00000565833 850 ntBASIC1.84□□□□□ -2.12
SCN3AQ9NY46 AC011494.1-201ENST00000596454 237 ntBASIC1.84□□□□□ -2.12
SCN3AQ9NY46 AC013562.2-201ENST00000611632 603 ntBASIC1.84□□□□□ -2.12
SCN3AQ9NY46 Y_RNA.783-201ENST00000613546 102 ntBASIC1.84□□□□□ -2.12
SCN3AQ9NY46 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.84□□□□□ -2.12
SCN3AQ9NY46 AC002543.1-201ENST00000299783 1954 ntBASIC1.84□□□□□ -2.12
SCN3AQ9NY46 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.83□□□□□ -2.12
SCN3AQ9NY46 SFR1P1-201ENST00000403720 688 ntBASIC1.83□□□□□ -2.12
SCN3AQ9NY46 AL121578.1-201ENST00000428051 892 ntBASIC1.83□□□□□ -2.12
SCN3AQ9NY46 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC1.83□□□□□ -2.12
SCN3AQ9NY46 RPL7P52-201ENST00000449200 742 ntBASIC1.83□□□□□ -2.12
SCN3AQ9NY46 AC233279.1-201ENST00000455300 423 ntBASIC1.83□□□□□ -2.12
SCN3AQ9NY46 AP000852.1-201ENST00000472460 573 ntBASIC1.83□□□□□ -2.12
SCN3AQ9NY46 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC1.83□□□□□ -2.12
SCN3AQ9NY46 AC079804.2-201ENST00000490376 200 ntBASIC1.83□□□□□ -2.12
SCN3AQ9NY46 FAM92A1P2-202ENST00000504766 877 ntBASIC1.83□□□□□ -2.12
SCN3AQ9NY46 AC016065.2-201ENST00000514530 444 ntBASIC1.83□□□□□ -2.12
SCN3AQ9NY46 SNORA31.8-201ENST00000516327 108 ntBASIC1.83□□□□□ -2.12
SCN3AQ9NY46 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC1.83□□□□□ -2.12
SCN3AQ9NY46 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC1.83□□□□□ -2.12
SCN3AQ9NY46 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC1.83□□□□□ -2.12
SCN3AQ9NY46 MIR6845-201ENST00000613182 61 ntBASIC1.83□□□□□ -2.12
SCN3AQ9NY46 AL355810.1-201ENST00000614629 552 ntBASIC1.83□□□□□ -2.12
SCN3AQ9NY46 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC1.83□□□□□ -2.12
SCN3AQ9NY46 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
SCN3AQ9NY46 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.83□□□□□ -2.12
SCN3AQ9NY46 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
SCN3AQ9NY46 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
SCN3AQ9NY46 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
SCN3AQ9NY46 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
SCN3AQ9NY46 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC1.83□□□□□ -2.12
SCN3AQ9NY46 MTCO1P57-201ENST00000432182 261 ntBASIC1.83□□□□□ -2.12
SCN3AQ9NY46 AC092685.1-201ENST00000447960 1243 ntBASIC1.83□□□□□ -2.12
SCN3AQ9NY46 AC011753.1-201ENST00000451001 220 ntBASIC1.83□□□□□ -2.12
SCN3AQ9NY46 RNU6-760P-201ENST00000516078 97 ntBASIC1.83□□□□□ -2.12
SCN3AQ9NY46 AC068339.2-201ENST00000534395 618 ntBASIC1.83□□□□□ -2.12
SCN3AQ9NY46 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC1.83□□□□□ -2.12
SCN3AQ9NY46 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC1.83□□□□□ -2.12
SCN3AQ9NY46 DUXAP4-201ENST00000603046 613 ntBASIC1.83□□□□□ -2.12
SCN3AQ9NY46 AC068831.7-201ENST00000616954 363 ntBASIC1.83□□□□□ -2.12
SCN3AQ9NY46 AC006249.1-201ENST00000621223 471 ntBASIC1.83□□□□□ -2.12
SCN3AQ9NY46 LINC00216-201ENST00000623548 1126 ntBASIC1.83□□□□□ -2.12
SCN3AQ9NY46 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC1.83□□□□□ -2.12
SCN3AQ9NY46 MTND5P29-201ENST00000458676 1807 ntBASIC1.83□□□□□ -2.12
SCN3AQ9NY46 AP006437.1-201ENST00000641440 3685 ntBASIC1.82□□□□□ -2.12
SCN3AQ9NY46 AC135776.4-201ENST00000624300 1904 ntBASIC1.82□□□□□ -2.12
SCN3AQ9NY46 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
SCN3AQ9NY46 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
SCN3AQ9NY46 RNU6-1180P-201ENST00000364935 107 ntBASIC1.82□□□□□ -2.12
SCN3AQ9NY46 Z86062.1-201ENST00000406773 777 ntBASIC1.82□□□□□ -2.12
SCN3AQ9NY46 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC1.82□□□□□ -2.12
SCN3AQ9NY46 SDR42E1P3-201ENST00000438345 502 ntBASIC1.82□□□□□ -2.12
SCN3AQ9NY46 HMGB3P12-201ENST00000438745 556 ntBASIC1.82□□□□□ -2.12
SCN3AQ9NY46 AL645638.1-201ENST00000440519 361 ntBASIC1.82□□□□□ -2.12
SCN3AQ9NY46 AC009296.1-201ENST00000443146 155 ntBASIC1.82□□□□□ -2.12
SCN3AQ9NY46 AC010625.1-201ENST00000511296 403 ntBASIC1.82□□□□□ -2.12
SCN3AQ9NY46 HMGB1P46-201ENST00000520062 610 ntBASIC1.82□□□□□ -2.12
SCN3AQ9NY46 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC1.82□□□□□ -2.12
SCN3AQ9NY46 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC1.82□□□□□ -2.12
SCN3AQ9NY46 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC1.82□□□□□ -2.12
SCN3AQ9NY46 AL356280.1-201ENST00000603614 379 ntBASIC1.82□□□□□ -2.12
SCN3AQ9NY46 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SCN3AQ9NY46 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC1.81□□□□□ -2.12
SCN3AQ9NY46 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC1.81□□□□□ -2.12
SCN3AQ9NY46 TATDN1P1-201ENST00000414123 891 ntBASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms