Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 ELOCP35-201ENST00000604289 336 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 AP002826.1-201ENST00000608835 315 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.1□□□□□ -1.91
DDX28Q9NUL7 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
DDX28Q9NUL7 AC090740.1-201ENST00000623193 2262 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
DDX28Q9NUL7 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
DDX28Q9NUL7 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.09□□□□□ -1.91
DDX28Q9NUL7 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
DDX28Q9NUL7 SNORD9-201ENST00000362566 104 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 U3.11-201ENST00000364476 212 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 RNU6-744P-201ENST00000365557 107 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 RNU6-1316P-201ENST00000384242 108 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 AL031121.1-201ENST00000406553 254 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 MIR320C1-201ENST00000408566 88 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.09□□□□□ -1.91
DDX28Q9NUL7 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.09□□□□□ -1.91
DDX28Q9NUL7 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.09□□□□□ -1.91
DDX28Q9NUL7 RPL27AP8-201ENST00000424277 446 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.09□□□□□ -1.91
DDX28Q9NUL7 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.09□□□□□ -1.91
DDX28Q9NUL7 AL035407.1-201ENST00000429211 571 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 AC104332.2-201ENST00000429959 156 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC3.09□□□□□ -1.91
DDX28Q9NUL7 AL357552.1-201ENST00000445254 415 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 RPL23AP35-201ENST00000451906 501 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.09□□□□□ -1.91
DDX28Q9NUL7 MTND1P9-201ENST00000453775 944 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC3.09□□□□□ -1.91
DDX28Q9NUL7 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.09□□□□□ -1.91
DDX28Q9NUL7 AC147055.4-201ENST00000504399 745 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 ARL4AP2-201ENST00000507378 601 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 AC104619.4-201ENST00000510773 249 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.09□□□□□ -1.91
DDX28Q9NUL7 SNORA70.16-201ENST00000516390 95 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 MRPS36P3-201ENST00000519284 130 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.09□□□□□ -1.91
DDX28Q9NUL7 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.09□□□□□ -1.91
DDX28Q9NUL7 AC010653.1-201ENST00000571108 881 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.09□□□□□ -1.91
DDX28Q9NUL7 AP001429.1-201ENST00000602568 530 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 AC022022.2-201ENST00000602989 360 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 AL031281.1-201ENST00000604049 488 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.09□□□□□ -1.91
DDX28Q9NUL7 AL139418.1-201ENST00000613613 177 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 AL450472.3-201ENST00000615578 367 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 AC090617.7-201ENST00000623952 126 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.09□□□□□ -1.91
DDX28Q9NUL7 AC087359.1-201ENST00000508335 1740 ntBASIC3.09□□□□□ -1.91
DDX28Q9NUL7 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
DDX28Q9NUL7 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.92
DDX28Q9NUL7 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 RNU6-777P-201ENST00000364265 104 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 RPS3AP24-201ENST00000407896 734 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 U3.42-201ENST00000408746 214 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 RN7SKP58-201ENST00000411010 305 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 XKRYP1-201ENST00000423438 492 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 BX119904.4-201ENST00000424402 301 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 CYCSP4-201ENST00000429682 331 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 XKRYP2-201ENST00000432915 492 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 SNRPEP4-201ENST00000435815 279 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 ISCA1P2-201ENST00000438679 421 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 THAP5P1-201ENST00000439089 262 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 AC104472.2-201ENST00000469035 601 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 MTND2P14-201ENST00000482139 351 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 AC021382.1-201ENST00000483523 359 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 AC106707.2-201ENST00000484182 374 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 HMGB1P36-201ENST00000487709 576 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 AC093809.1-201ENST00000509155 340 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 MTCYBP43-201ENST00000513621 740 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 RNU6-56P-201ENST00000516986 93 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 FAM60DP-201ENST00000524174 632 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 AP003497.1-201ENST00000528472 562 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.08□□□□□ -1.92
DDX28Q9NUL7 AC055876.1-202ENST00000567053 138 ntBASIC3.08□□□□□ -1.92
DDX28Q9NUL7 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 127.3 ms