Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 RPS29P4-201ENST00000414733 161 ntBASIC3.95□□□□□ -1.78
EBF3Q9H4W6 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 C1DP2-201ENST00000418167 426 ntBASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AL513174.1-201ENST00000423182 629 ntBASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 HMGB1P37-201ENST00000439613 609 ntBASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 USP9YP12-201ENST00000450481 570 ntBASIC3.95□□□□□ -1.78
EBF3Q9H4W6 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 PRSS3P4-201ENST00000453323 162 ntBASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AC010683.1-201ENST00000473673 378 ntBASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AP001893.2-201ENST00000526949 202 ntBASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 HMGB1P33-201ENST00000563485 527 ntBASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AC137800.2-201ENST00000574375 120 ntBASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 MIR4637-201ENST00000582405 84 ntBASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AC009977.1-201ENST00000586015 570 ntBASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AP001506.1-201ENST00000615444 211 ntBASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AL357559.1-201ENST00000622228 274 ntBASIC3.95□□□□□ -1.78
EBF3Q9H4W6 AC093591.3-201ENST00000634516 308 ntBASIC3.95□□□□□ -1.78
EBF3Q9H4W6 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 Y_RNA.263-201ENST00000364659 114 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 Y_RNA.409-201ENST00000383990 98 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AL603766.1-201ENST00000407763 664 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 MIR1183-201ENST00000408856 89 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 Y_RNA.598-201ENST00000410480 95 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 RPS3AP3-201ENST00000411933 242 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 RPS3AP9-201ENST00000417027 792 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 MTCO1P20-201ENST00000425366 358 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 HSPD1P21-201ENST00000436541 245 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AC007677.1-201ENST00000445757 515 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 GAPDHP17-201ENST00000449858 1001 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 snoU109.1-201ENST00000459339 135 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AC092757.1-201ENST00000467293 467 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AP000893.1-201ENST00000474462 794 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AC114786.4-201ENST00000508771 728 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AC110768.1-201ENST00000509222 400 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AC024589.1-201ENST00000512207 263 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AC005798.1-201ENST00000513715 387 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 FAM92A1P1-201ENST00000528023 890 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 MIR5187-201ENST00000583479 76 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 SNORD39.3-201ENST00000584451 71 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AP001429.1-201ENST00000602568 530 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AC112187.2-201ENST00000604345 283 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AL161756.2-201ENST00000604597 246 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AC009159.1-201ENST00000618386 642 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AL445264.1-201ENST00000621719 171 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AC112204.3-201ENST00000623822 332 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AC008725.1-201ENST00000605123 2263 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 172.8 ms