Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 SAMMSON-213ENST00000641336 1521 ntBASIC5.23□□□□□ -1.57
TRIM56Q9BRZ2 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 U3.2-201ENST00000362981 210 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 RNA5SP90-201ENST00000364801 99 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 Y_RNA.399-201ENST00000383955 105 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 RNU6-171P-201ENST00000384354 107 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 RNY1P14-201ENST00000384426 108 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 Y_RNA.574-201ENST00000384766 95 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 AL583834.1-201ENST00000406943 343 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 SPTLC1P2-201ENST00000407089 121 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 AC092447.6-201ENST00000414578 210 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 RPLP0P7-201ENST00000416050 667 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 AL360081.1-201ENST00000428299 555 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 RN7SL283P-201ENST00000489055 303 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 RNU6-1095P-201ENST00000516148 108 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 AP006245.2-201ENST00000522004 300 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 AL121576.1-201ENST00000556055 276 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 MIR1269B-201ENST00000580405 75 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 AC008521.1-201ENST00000587471 187 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 FKBP1AP1-201ENST00000594588 318 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 AL031320.1-201ENST00000604177 357 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 AL034351.1-201ENST00000605288 668 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 AC100812.1-201ENST00000607622 580 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 AC009229.3-201ENST00000608056 282 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 MIR6837-201ENST00000620884 64 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 AC110801.1-201ENST00000623590 212 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 ASNSP1-201ENST00000518311 1939 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 PABPC1P6-201ENST00000445594 1829 ntBASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC5.22□□□□□ -1.57
TRIM56Q9BRZ2 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.21□□□□□ -1.57
TRIM56Q9BRZ2 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC5.21□□□□□ -1.57
TRIM56Q9BRZ2 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 RNU6-490P-201ENST00000362985 107 ntBASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 RNA5-8SP7-201ENST00000363443 155 ntBASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 RNU6-1155P-201ENST00000363554 107 ntBASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 CRP-202ENST00000368110 667 ntTSL 3 BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 SNORD70.1-201ENST00000391007 85 ntBASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 SNORA68.2-201ENST00000391263 128 ntBASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 AL035079.1-201ENST00000405210 287 ntBASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 DPPA2P3-201ENST00000411853 655 ntBASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 RN7SL610P-201ENST00000463845 291 ntBASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 OR2AO1P-201ENST00000476497 403 ntBASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 SNORA14.1-201ENST00000516113 141 ntBASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 RNU6-635P-201ENST00000516651 102 ntBASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 AC105031.1-201ENST00000518550 476 ntBASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 APAF1-207ENST00000547743 651 ntTSL 3 BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 MIR5692C1-201ENST00000585309 91 ntBASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 AC007998.5-201ENST00000622938 237 ntBASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 AC073869.10-201ENST00000642016 354 ntBASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
TRIM56Q9BRZ2 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms