Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 Y_RNA.51-201ENST00000362725 102 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 SNORD35B-201ENST00000363660 87 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 Y_RNA.318-201ENST00000365131 97 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 RNU5E-5P-201ENST00000365379 116 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 RNVU1-14-201ENST00000384770 164 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 AL122016.1-201ENST00000403365 367 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 AL591034.1-201ENST00000407447 340 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 RPL17P12-201ENST00000413391 526 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 AL137014.1-201ENST00000420490 1226 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 AL356583.2-201ENST00000426536 280 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 AC083863.1-201ENST00000438811 231 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 AL590365.1-201ENST00000450788 243 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 MTCO3P20-201ENST00000454926 688 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 RN7SL93P-201ENST00000463035 293 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 AC010424.1-201ENST00000506336 297 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 RNU6-798P-201ENST00000516912 103 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 AC006362.1-201ENST00000567392 174 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 MIR5697-201ENST00000578045 78 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 AC112187.2-201ENST00000604345 283 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 AL354798.1-201ENST00000622505 329 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 MIR6500-201ENST00000622700 86 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 AC079597.1-201ENST00000624306 508 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 U6.105-201ENST00000637379 88 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 MTCO1P9-201ENST00000505577 1534 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 AC092447.10-201ENST00000620607 1652 ntBASIC3.24□□□□□ -1.89
PDLIM3Q53GG5 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 HSPA8P1-201ENST00000425843 1833 ntBASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 AC006504.1-201ENST00000562493 3666 ntBASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 AP000907.1-201ENST00000428428 510 ntBASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 AC010153.1-201ENST00000432862 727 ntBASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 RPL17P49-201ENST00000443728 411 ntBASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 COX6CP2-201ENST00000444980 225 ntBASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 AC104308.1-201ENST00000454621 333 ntBASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 OR9M1P-201ENST00000459641 921 ntBASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 MTND4LP3-201ENST00000468320 276 ntBASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 RPL7P24-201ENST00000493052 752 ntBASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 AL139099.1-201ENST00000497398 403 ntBASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 AC004069.2-201ENST00000505438 1114 ntBASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 AC105914.1-201ENST00000511798 226 ntBASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 RNU1-95P-201ENST00000516357 160 ntBASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 RNU1-128P-201ENST00000516704 160 ntBASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 RSL24D1P11-201ENST00000591045 491 ntBASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 TUG1_1.1-201ENST00000610654 145 ntBASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
PDLIM3Q53GG5 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
PDLIM3Q53GG5 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 7.3 ms