Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC3.68□□□□□ -1.82
COL28A1Q2UY09 MTCYBP33-201ENST00000575007 1130 ntBASIC3.68□□□□□ -1.82
COL28A1Q2UY09 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC3.68□□□□□ -1.82
COL28A1Q2UY09 AC128687.2-201ENST00000609657 566 ntBASIC3.68□□□□□ -1.82
COL28A1Q2UY09 AL590282.1-201ENST00000610379 1136 ntBASIC3.68□□□□□ -1.82
COL28A1Q2UY09 AC092140.2-201ENST00000618027 521 ntBASIC3.68□□□□□ -1.82
COL28A1Q2UY09 AC009878.1-201ENST00000621819 340 ntBASIC3.68□□□□□ -1.82
COL28A1Q2UY09 AC244258.1-201ENST00000637553 1071 ntBASIC3.68□□□□□ -1.82
COL28A1Q2UY09 AC068137.4-201ENST00000638485 296 ntBASIC3.68□□□□□ -1.82
COL28A1Q2UY09 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL28A1Q2UY09 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.68□□□□□ -1.82
COL28A1Q2UY09 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL28A1Q2UY09 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL28A1Q2UY09 USP8P1-201ENST00000494673 3183 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AC092125.1-201ENST00000562568 1995 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL28A1Q2UY09 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.67□□□□□ -1.82
COL28A1Q2UY09 Y_RNA.46-201ENST00000362695 102 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 RNU4-24P-201ENST00000364565 139 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.67□□□□□ -1.82
COL28A1Q2UY09 RNU6-809P-201ENST00000384461 107 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 Y_RNA.553-201ENST00000384670 102 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 MIR135A2-201ENST00000384854 100 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 RPS20P2-201ENST00000402520 389 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 MIR1251-201ENST00000408552 70 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 Y_RNA.608-201ENST00000410647 95 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 RNA5SP120-201ENST00000410900 112 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AL353777.1-201ENST00000425552 326 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AC011742.1-201ENST00000431448 434 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AC010153.1-201ENST00000432862 727 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.67□□□□□ -1.82
COL28A1Q2UY09 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.67□□□□□ -1.82
COL28A1Q2UY09 USP9YP12-201ENST00000450481 570 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AC010285.1-201ENST00000470580 392 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
COL28A1Q2UY09 RN7SL271P-201ENST00000487601 295 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AC068305.1-201ENST00000497406 726 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.67□□□□□ -1.82
COL28A1Q2UY09 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AC010424.1-201ENST00000506336 297 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AC022878.1-201ENST00000530684 149 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AP004242.1-201ENST00000533701 349 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.67□□□□□ -1.82
COL28A1Q2UY09 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AC060771.1-201ENST00000582031 164 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AC112191.3-201ENST00000604371 277 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AL359999.1-201ENST00000604513 294 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AC239868.4-201ENST00000608318 671 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AC009268.2-201ENST00000621925 457 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AL359757.2-201ENST00000624309 274 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AL773545.4-201ENST00000637262 310 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 AL513478.4-201ENST00000641636 310 ntBASIC3.67□□□□□ -1.82
COL28A1Q2UY09 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
COL28A1Q2UY09 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.67□□□□□ -1.82
COL28A1Q2UY09 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.67□□□□□ -1.82
COL28A1Q2UY09 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 RNU6-1078P-201ENST00000364522 103 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 RNU6-114P-201ENST00000384704 105 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 Y_RNA.598-201ENST00000410480 95 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AL356583.2-201ENST00000426536 280 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AC087650.1-201ENST00000431445 468 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 VN1R108P-201ENST00000431580 830 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AC073063.1-201ENST00000434352 607 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AL590365.1-201ENST00000450788 243 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 SSXP1-201ENST00000453640 473 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 RNU6-956P-201ENST00000458868 103 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 RN7SL93P-201ENST00000463035 293 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 RAP1BP2-201ENST00000478270 544 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AC068724.1-201ENST00000487100 792 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 BTF3L4P4-201ENST00000506381 449 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 MTND4P2-201ENST00000507767 1203 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AC021146.1-201ENST00000511202 716 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AC022483.1-201ENST00000514020 567 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 SCARNA14-201ENST00000516903 136 ntBASIC3.66□□□□□ -1.82
COL28A1Q2UY09 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.66□□□□□ -1.82
COL28A1Q2UY09 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms