Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 RNU6-209P-201ENST00000384118 107 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 Y_RNA.447-201ENST00000384184 113 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 Y_RNA.552-201ENST00000384665 112 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 RNU1-82P-201ENST00000390851 165 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 RNU6-823P-201ENST00000391042 103 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 GLULP6-201ENST00000399502 913 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 RN7SKP106-201ENST00000410832 272 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SOX4Q06945 AL356968.1-201ENST00000416622 474 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 RPL23AP38-201ENST00000423801 469 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 CALM2P2-201ENST00000428512 440 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 RPL21P112-201ENST00000434403 463 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 RPS17P8-201ENST00000434525 335 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC5.16□□□□□ -1.58
SOX4Q06945 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.16□□□□□ -1.58
SOX4Q06945 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC5.16□□□□□ -1.58
SOX4Q06945 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC5.16□□□□□ -1.58
SOX4Q06945 FHP1-201ENST00000442741 703 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 CEACAMP6-201ENST00000452007 574 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 AC022034.3-201ENST00000471393 478 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 AC073073.1-201ENST00000493920 463 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 RPL23AP55-201ENST00000498163 452 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 AC022493.2-201ENST00000506122 481 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 RNU6-120P-201ENST00000516077 103 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 RNU6-1069P-201ENST00000516612 133 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 RNU6-709P-201ENST00000517257 104 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 RPL23AP53-201ENST00000521854 457 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 RANP3-201ENST00000530970 276 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC5.16□□□□□ -1.58
SOX4Q06945 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC5.16□□□□□ -1.58
SOX4Q06945 DYNLL1P4-201ENST00000549314 266 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC5.16□□□□□ -1.58
SOX4Q06945 SNORA74C-1-201ENST00000580726 201 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 AC008521.1-201ENST00000587471 187 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 IGKV1OR2-118-201ENST00000603238 347 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 U2.17-201ENST00000611454 95 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC5.16□□□□□ -1.58
SOX4Q06945 BX005214.3-202ENST00000619809 325 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 AC243312.2-201ENST00000623340 601 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 MTND5P27-201ENST00000428871 1720 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SOX4Q06945 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
SOX4Q06945 AC104118.1-201ENST00000607625 1589 ntBASIC5.16□□□□□ -1.58
SOX4Q06945 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.16□□□□□ -1.58
SOX4Q06945 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SOX4Q06945 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SOX4Q06945 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SOX4Q06945 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SOX4Q06945 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SOX4Q06945 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SOX4Q06945 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
SOX4Q06945 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
SOX4Q06945 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
SOX4Q06945 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SOX4Q06945 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
SOX4Q06945 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SOX4Q06945 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC5.15□□□□□ -1.58
SOX4Q06945 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
SOX4Q06945 RNA5-8SP7-201ENST00000363443 155 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 RHOT1P2-201ENST00000366423 333 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 Y_RNA.485-201ENST00000384395 102 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 SNORD70.1-201ENST00000391007 85 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 FAR2P2-201ENST00000413041 594 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 AC119751.6-201ENST00000416712 186 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC5.15□□□□□ -1.59
SOX4Q06945 AC245028.1-201ENST00000423259 256 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 FAR2P4-202ENST00000425399 584 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 TRAPPC2P5-201ENST00000426293 308 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC5.15□□□□□ -1.59
SOX4Q06945 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC5.15□□□□□ -1.59
SOX4Q06945 AC005008.1-201ENST00000456151 612 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 RPL30P11-201ENST00000495304 339 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC5.15□□□□□ -1.59
SOX4Q06945 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC5.15□□□□□ -1.59
SOX4Q06945 RNU6-1332P-201ENST00000516666 104 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 RNU6-685P-201ENST00000517088 95 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 AC105031.1-201ENST00000518550 476 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC5.15□□□□□ -1.59
SOX4Q06945 HIGD1AP5-201ENST00000529959 259 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 AL110118.1-201ENST00000553543 400 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 AC006349.1-201ENST00000555526 235 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 AC025588.3-201ENST00000604182 274 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.15□□□□□ -1.59
SOX4Q06945 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
SOX4Q06945 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.15□□□□□ -1.59
SOX4Q06945 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.15□□□□□ -1.59
SOX4Q06945 SOCS5P3-201ENST00000425115 1576 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
SOX4Q06945 Z95327.2-201ENST00000414579 1873 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
SOX4Q06945 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.15□□□□□ -1.59
SOX4Q06945 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
SOX4Q06945 GABPAP-201ENST00000419271 1356 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
SOX4Q06945 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
SOX4Q06945 EXOC5P1-201ENST00000510543 1969 ntBASIC5.15□□□□□ -1.59
SOX4Q06945 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC5.15□□□□□ -1.59
SOX4Q06945 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SOX4Q06945 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms