Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 USP9YP12-201ENST00000450481 570 ntBASIC3.32□□□□□ -1.88
CDH11P55287 AL590365.1-201ENST00000450788 243 ntBASIC3.32□□□□□ -1.88
CDH11P55287 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.32□□□□□ -1.88
CDH11P55287 SSXP1-201ENST00000453640 473 ntBASIC3.32□□□□□ -1.88
CDH11P55287 ST13P14-201ENST00000474095 734 ntBASIC3.32□□□□□ -1.88
CDH11P55287 AC078817.1-201ENST00000492623 435 ntBASIC3.32□□□□□ -1.88
CDH11P55287 LAMTOR3P2-201ENST00000504479 232 ntBASIC3.32□□□□□ -1.88
CDH11P55287 PCBP2P3-201ENST00000509726 843 ntBASIC3.32□□□□□ -1.88
CDH11P55287 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.32□□□□□ -1.88
CDH11P55287 RNU6-201P-201ENST00000517100 61 ntBASIC3.32□□□□□ -1.88
CDH11P55287 AC093331.1-201ENST00000521474 169 ntBASIC3.32□□□□□ -1.88
CDH11P55287 MTND4LP18-201ENST00000526864 291 ntBASIC3.32□□□□□ -1.88
CDH11P55287 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.32□□□□□ -1.88
CDH11P55287 AP003122.4-201ENST00000530980 758 ntBASIC3.32□□□□□ -1.88
CDH11P55287 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.32□□□□□ -1.88
CDH11P55287 CR383656.7-201ENST00000548164 174 ntBASIC3.32□□□□□ -1.88
CDH11P55287 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.32□□□□□ -1.88
CDH11P55287 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.32□□□□□ -1.88
CDH11P55287 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.32□□□□□ -1.88
CDH11P55287 TPMTP1-201ENST00000592307 737 ntBASIC3.32□□□□□ -1.88
CDH11P55287 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.32□□□□□ -1.88
CDH11P55287 XIAPP1-201ENST00000603162 600 ntBASIC3.32□□□□□ -1.88
CDH11P55287 AC015871.2-201ENST00000603605 948 ntBASIC3.32□□□□□ -1.88
CDH11P55287 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.32□□□□□ -1.88
CDH11P55287 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC3.32□□□□□ -1.88
CDH11P55287 AC011816.2-201ENST00000607089 556 ntBASIC3.32□□□□□ -1.88
CDH11P55287 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.32□□□□□ -1.88
CDH11P55287 RMST_8.1-201ENST00000610287 165 ntBASIC3.32□□□□□ -1.88
CDH11P55287 AL353748.2-201ENST00000622148 471 ntBASIC3.32□□□□□ -1.88
CDH11P55287 AC079597.1-201ENST00000624306 508 ntBASIC3.32□□□□□ -1.88
CDH11P55287 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.32□□□□□ -1.88
CDH11P55287 AL732372.2-225ENST00000642124 456 ntBASIC3.32□□□□□ -1.88
CDH11P55287 TEX21P-201ENST00000447107 1476 ntBASIC3.32□□□□□ -1.88
CDH11P55287 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
CDH11P55287 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CDH11P55287 AC009902.3-201ENST00000606235 2172 ntBASIC3.32□□□□□ -1.88
CDH11P55287 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CDH11P55287 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CDH11P55287 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
CDH11P55287 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CDH11P55287 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.32□□□□□ -1.88
CDH11P55287 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CDH11P55287 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.31□□□□□ -1.88
CDH11P55287 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CDH11P55287 ZNF285B-201ENST00000561698 1767 ntBASIC3.31□□□□□ -1.88
CDH11P55287 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CDH11P55287 RNU6-97P-201ENST00000363387 104 ntBASIC3.31□□□□□ -1.88
CDH11P55287 RNU6-1155P-201ENST00000363554 107 ntBASIC3.31□□□□□ -1.88
CDH11P55287 RNU5F-7P-201ENST00000363696 115 ntBASIC3.31□□□□□ -1.88
CDH11P55287 RNU4-75P-201ENST00000364621 146 ntBASIC3.31□□□□□ -1.88
CDH11P55287 RNU6-1119P-201ENST00000384349 108 ntBASIC3.31□□□□□ -1.88
CDH11P55287 RNU6-348P-201ENST00000384386 107 ntBASIC3.31□□□□□ -1.88
CDH11P55287 MIR449B-201ENST00000384995 97 ntBASIC3.31□□□□□ -1.88
CDH11P55287 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
CDH11P55287 PTMAP5-201ENST00000393073 333 ntBASIC3.31□□□□□ -1.88
CDH11P55287 AL359704.1-201ENST00000411586 781 ntBASIC3.31□□□□□ -1.88
CDH11P55287 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.31□□□□□ -1.88
CDH11P55287 HMGN1P14-201ENST00000412459 517 ntBASIC3.31□□□□□ -1.88
CDH11P55287 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC3.31□□□□□ -1.88
CDH11P55287 USP9YP13-201ENST00000417797 480 ntBASIC3.31□□□□□ -1.88
CDH11P55287 RPL21P32-201ENST00000419877 477 ntBASIC3.31□□□□□ -1.88
CDH11P55287 AL158071.1-201ENST00000430315 461 ntBASIC3.31□□□□□ -1.88
CDH11P55287 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.31□□□□□ -1.88
CDH11P55287 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.31□□□□□ -1.88
CDH11P55287 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
CDH11P55287 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.31□□□□□ -1.88
CDH11P55287 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.31□□□□□ -1.88
CDH11P55287 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.31□□□□□ -1.88
CDH11P55287 AP1S2P1-201ENST00000457344 379 ntBASIC3.31□□□□□ -1.88
CDH11P55287 AP000873.1-201ENST00000463987 400 ntBASIC3.31□□□□□ -1.88
CDH11P55287 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.31□□□□□ -1.88
CDH11P55287 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.31□□□□□ -1.88
CDH11P55287 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CDH11P55287 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC3.31□□□□□ -1.88
CDH11P55287 RNU6-528P-201ENST00000516926 100 ntBASIC3.31□□□□□ -1.88
CDH11P55287 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CDH11P55287 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CDH11P55287 AC018630.1-201ENST00000541376 925 ntBASIC3.31□□□□□ -1.88
CDH11P55287 AC008011.1-201ENST00000545989 227 ntBASIC3.31□□□□□ -1.88
CDH11P55287 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.31□□□□□ -1.88
CDH11P55287 TGIF1P1-201ENST00000558095 802 ntBASIC3.31□□□□□ -1.88
CDH11P55287 AGGF1P4-201ENST00000568249 801 ntBASIC3.31□□□□□ -1.88
CDH11P55287 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.31□□□□□ -1.88
CDH11P55287 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CDH11P55287 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.31□□□□□ -1.88
CDH11P55287 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.31□□□□□ -1.88
CDH11P55287 AC112191.3-201ENST00000604371 277 ntBASIC3.31□□□□□ -1.88
CDH11P55287 AC092354.2-201ENST00000607786 514 ntBASIC3.31□□□□□ -1.88
CDH11P55287 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.31□□□□□ -1.88
CDH11P55287 AC103591.3-201ENST00000608684 209 ntBASIC3.31□□□□□ -1.88
CDH11P55287 AL355472.4-201ENST00000610233 626 ntBASIC3.31□□□□□ -1.88
CDH11P55287 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.31□□□□□ -1.88
CDH11P55287 AC092628.2-201ENST00000622492 339 ntBASIC3.31□□□□□ -1.88
CDH11P55287 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.31□□□□□ -1.88
CDH11P55287 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.31□□□□□ -1.88
CDH11P55287 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CDH11P55287 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
CDH11P55287 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
CDH11P55287 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.31□□□□□ -1.88
CDH11P55287 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 210.5 ms