Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AP002884.2-201ENST00000471647 395 ntBASIC4.03□□□□□ -1.76
CTCFP49711 BZW1P2-201ENST00000473537 826 ntBASIC4.03□□□□□ -1.76
CTCFP49711 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.03□□□□□ -1.76
CTCFP49711 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC4.03□□□□□ -1.76
CTCFP49711 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CTCFP49711 HMGB1P22-201ENST00000505315 124 ntBASIC4.03□□□□□ -1.76
CTCFP49711 RNU6-759P-201ENST00000516740 103 ntBASIC4.03□□□□□ -1.76
CTCFP49711 RNU6-678P-201ENST00000516832 109 ntBASIC4.03□□□□□ -1.76
CTCFP49711 ATP5F1P5-201ENST00000526403 760 ntBASIC4.03□□□□□ -1.76
CTCFP49711 AL121766.1-201ENST00000547436 487 ntBASIC4.03□□□□□ -1.76
CTCFP49711 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC4.03□□□□□ -1.76
CTCFP49711 AL163642.2-201ENST00000604722 1019 ntBASIC4.03□□□□□ -1.76
CTCFP49711 AC008121.2-201ENST00000614647 523 ntBASIC4.03□□□□□ -1.76
CTCFP49711 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC4.03□□□□□ -1.76
CTCFP49711 AL356596.1-201ENST00000624230 379 ntBASIC4.03□□□□□ -1.76
CTCFP49711 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
CTCFP49711 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CTCFP49711 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CTCFP49711 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CTCFP49711 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
CTCFP49711 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.02□□□□□ -1.77
CTCFP49711 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
CTCFP49711 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC4.02□□□□□ -1.77
CTCFP49711 OR5J1P-201ENST00000313544 939 ntBASIC4.02□□□□□ -1.77
CTCFP49711 RNU6-500P-201ENST00000362349 107 ntBASIC4.02□□□□□ -1.77
CTCFP49711 RNA5SP258-201ENST00000362750 119 ntBASIC4.02□□□□□ -1.77
CTCFP49711 RNU6-553P-201ENST00000364047 96 ntBASIC4.02□□□□□ -1.77
CTCFP49711 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CTCFP49711 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC4.02□□□□□ -1.77
CTCFP49711 RN7SKP111-201ENST00000410349 271 ntBASIC4.02□□□□□ -1.77
CTCFP49711 RNU2-71P-201ENST00000411395 189 ntBASIC4.02□□□□□ -1.77
CTCFP49711 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.02□□□□□ -1.77
CTCFP49711 AC007390.1-201ENST00000415722 356 ntBASIC4.02□□□□□ -1.77
CTCFP49711 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.02□□□□□ -1.77
CTCFP49711 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC4.02□□□□□ -1.77
CTCFP49711 MTCYBP45-201ENST00000435243 565 ntBASIC4.02□□□□□ -1.77
CTCFP49711 HMGB1P12-201ENST00000438594 598 ntBASIC4.02□□□□□ -1.77
CTCFP49711 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC4.02□□□□□ -1.77
CTCFP49711 MTCO3P16-201ENST00000454456 754 ntBASIC4.02□□□□□ -1.77
CTCFP49711 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.02□□□□□ -1.77
CTCFP49711 VN1R17P-201ENST00000472048 1090 ntBASIC4.02□□□□□ -1.77
CTCFP49711 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC4.02□□□□□ -1.77
CTCFP49711 AC023424.2-201ENST00000493479 777 ntBASIC4.02□□□□□ -1.77
CTCFP49711 AC005178.1-201ENST00000508392 440 ntBASIC4.02□□□□□ -1.77
CTCFP49711 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.02□□□□□ -1.77
CTCFP49711 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC4.02□□□□□ -1.77
CTCFP49711 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC4.02□□□□□ -1.77
CTCFP49711 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC4.02□□□□□ -1.77
CTCFP49711 OR4P1P-201ENST00000530808 1136 ntBASIC4.02□□□□□ -1.77
CTCFP49711 AC109635.4-202ENST00000531666 412 ntBASIC4.02□□□□□ -1.77
CTCFP49711 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.02□□□□□ -1.77
CTCFP49711 AC008011.1-201ENST00000545989 227 ntBASIC4.02□□□□□ -1.77
CTCFP49711 OR6C7P-201ENST00000547875 934 ntBASIC4.02□□□□□ -1.77
CTCFP49711 ANKRD36BP2-206ENST00000575193 1245 ntBASIC4.02□□□□□ -1.77
CTCFP49711 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC4.02□□□□□ -1.77
CTCFP49711 AC078883.4-201ENST00000623218 367 ntBASIC4.02□□□□□ -1.77
CTCFP49711 AC009039.2-201ENST00000624524 529 ntBASIC4.02□□□□□ -1.77
CTCFP49711 PCMTD1P7-201ENST00000634506 357 ntBASIC4.02□□□□□ -1.77
CTCFP49711 AC099063.3-201ENST00000642066 185 ntBASIC4.02□□□□□ -1.77
CTCFP49711 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.02□□□□□ -1.77
CTCFP49711 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CTCFP49711 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.02□□□□□ -1.77
CTCFP49711 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CTCFP49711 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC4.02□□□□□ -1.77
CTCFP49711 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.01□□□□□ -1.77
CTCFP49711 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.01□□□□□ -1.77
CTCFP49711 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.01□□□□□ -1.77
CTCFP49711 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
CTCFP49711 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CTCFP49711 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
CTCFP49711 RNU6-289P-201ENST00000364093 107 ntBASIC4.01□□□□□ -1.77
CTCFP49711 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.01□□□□□ -1.77
CTCFP49711 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC4.01□□□□□ -1.77
CTCFP49711 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC4.01□□□□□ -1.77
CTCFP49711 UBE2FP3-201ENST00000436366 524 ntBASIC4.01□□□□□ -1.77
CTCFP49711 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4.01□□□□□ -1.77
CTCFP49711 AC109925.1-201ENST00000478069 331 ntBASIC4.01□□□□□ -1.77
CTCFP49711 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC4.01□□□□□ -1.77
CTCFP49711 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC4.01□□□□□ -1.77
CTCFP49711 AC111000.2-201ENST00000507775 550 ntBASIC4.01□□□□□ -1.77
CTCFP49711 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC4.01□□□□□ -1.77
CTCFP49711 FCF1P8-201ENST00000510322 597 ntBASIC4.01□□□□□ -1.77
CTCFP49711 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC4.01□□□□□ -1.77
CTCFP49711 AC093677.1-201ENST00000514414 678 ntBASIC4.01□□□□□ -1.77
CTCFP49711 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CTCFP49711 HIGD1AP10-201ENST00000527837 282 ntBASIC4.01□□□□□ -1.77
CTCFP49711 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.01□□□□□ -1.77
CTCFP49711 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC4.01□□□□□ -1.77
CTCFP49711 GTF3AP2-201ENST00000557014 266 ntBASIC4.01□□□□□ -1.77
CTCFP49711 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC4.01□□□□□ -1.77
CTCFP49711 BBIP1P1-201ENST00000602999 279 ntBASIC4.01□□□□□ -1.77
CTCFP49711 AL590282.1-201ENST00000610379 1136 ntBASIC4.01□□□□□ -1.77
CTCFP49711 5S_rRNA.12-201ENST00000617631 107 ntBASIC4.01□□□□□ -1.77
CTCFP49711 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
CTCFP49711 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC4.01□□□□□ -1.77
CTCFP49711 AL596245.1-201ENST00000618994 362 ntBASIC4.01□□□□□ -1.77
CTCFP49711 AP003355.3-201ENST00000623465 114 ntBASIC4.01□□□□□ -1.77
CTCFP49711 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC4.01□□□□□ -1.77
CTCFP49711 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.01□□□□□ -1.77
CTCFP49711 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms