Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SNRPGP16-201ENST00000533275 226 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 ELOCP31-201ENST00000540463 467 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 AC006518.2-201ENST00000542513 940 ntBASIC2.73□□□□□ -1.97
BRCA1P38398 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC2.73□□□□□ -1.97
BRCA1P38398 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
BRCA1P38398 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
BRCA1P38398 RNU6-600P-201ENST00000362524 99 ntBASIC2.72□□□□□ -1.97
BRCA1P38398 PTP4A1P7-201ENST00000423476 514 ntBASIC2.72□□□□□ -1.97
BRCA1P38398 RSL24D1P8-201ENST00000434442 492 ntBASIC2.72□□□□□ -1.97
BRCA1P38398 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC2.72□□□□□ -1.97
BRCA1P38398 AC124916.1-201ENST00000444020 547 ntBASIC2.72□□□□□ -1.97
BRCA1P38398 AC004022.1-201ENST00000447766 1066 ntBASIC2.72□□□□□ -1.97
BRCA1P38398 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC2.72□□□□□ -1.97
BRCA1P38398 RPS15AP1-201ENST00000457423 391 ntBASIC2.72□□□□□ -1.97
BRCA1P38398 UBE2Q2P9-201ENST00000490086 202 ntBASIC2.72□□□□□ -1.97
BRCA1P38398 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
BRCA1P38398 AC016065.2-201ENST00000514530 444 ntBASIC2.72□□□□□ -1.97
BRCA1P38398 RNU6-416P-201ENST00000516265 103 ntBASIC2.72□□□□□ -1.97
BRCA1P38398 AP004371.1-201ENST00000525240 214 ntBASIC2.72□□□□□ -1.97
BRCA1P38398 ZNF705CP-201ENST00000530515 889 ntBASIC2.72□□□□□ -1.97
BRCA1P38398 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC2.72□□□□□ -1.97
BRCA1P38398 AC123904.3-201ENST00000547218 814 ntBASIC2.72□□□□□ -1.97
BRCA1P38398 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC2.72□□□□□ -1.97
BRCA1P38398 RPAP2P1-201ENST00000603626 1168 ntBASIC2.72□□□□□ -1.97
BRCA1P38398 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
BRCA1P38398 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
BRCA1P38398 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
BRCA1P38398 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.97
BRCA1P38398 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
BRCA1P38398 RNU6-263P-201ENST00000363811 107 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 SNORA26.9-201ENST00000391322 122 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 PAICSP7-201ENST00000419829 962 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC2.71□□□□□ -1.98
BRCA1P38398 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.71□□□□□ -1.98
BRCA1P38398 MTCO3P2-201ENST00000457365 171 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 MLLT10P2-201ENST00000506434 249 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 AC006390.1-201ENST00000508068 283 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 AC121161.1-201ENST00000510606 652 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC2.71□□□□□ -1.98
BRCA1P38398 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC2.71□□□□□ -1.98
BRCA1P38398 RNA5SP385-201ENST00000515947 110 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 SCARNA16.3-201ENST00000516595 184 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.71□□□□□ -1.98
BRCA1P38398 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
BRCA1P38398 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC2.71□□□□□ -1.98
BRCA1P38398 AC079148.1-201ENST00000565944 819 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.71□□□□□ -1.98
BRCA1P38398 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC2.71□□□□□ -1.98
BRCA1P38398 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC2.71□□□□□ -1.98
BRCA1P38398 AL020997.3-201ENST00000602843 359 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC2.71□□□□□ -1.98
BRCA1P38398 AC009487.2-201ENST00000420969 6821 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
BRCA1P38398 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
BRCA1P38398 RNA5SP129-201ENST00000410276 118 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 AC114973.1-201ENST00000429057 632 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 AC092427.1-202ENST00000430569 476 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC2.71□□□□□ -1.98
BRCA1P38398 RPL17P35-201ENST00000432217 549 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC2.71□□□□□ -1.98
BRCA1P38398 MTCO3P43-201ENST00000440974 771 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 RNU6-1102P-201ENST00000516149 96 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 RNA5SP200-201ENST00000516360 103 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC2.71□□□□□ -1.98
BRCA1P38398 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC2.71□□□□□ -1.98
BRCA1P38398 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC2.71□□□□□ -1.98
BRCA1P38398 MTCO3P13-201ENST00000577757 781 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 GAS5-AS1-201ENST00000602767 694 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 AP003973.1-201ENST00000604639 691 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 AC093673.2-201ENST00000609674 331 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
BRCA1P38398 AC010378.1-201ENST00000619270 362 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 AC132825.7-201ENST00000638744 335 ntBASIC2.71□□□□□ -1.98
BRCA1P38398 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
BRCA1P38398 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC2.7□□□□□ -1.98
BRCA1P38398 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
BRCA1P38398 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC2.7□□□□□ -1.98
BRCA1P38398 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
BRCA1P38398 SGO1P1-201ENST00000603525 1447 ntBASIC2.7□□□□□ -1.98
BRCA1P38398 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC2.7□□□□□ -1.98
BRCA1P38398 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
BRCA1P38398 DYNLT3P1-201ENST00000378574 347 ntBASIC2.7□□□□□ -1.98
BRCA1P38398 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC2.7□□□□□ -1.98
BRCA1P38398 MTCO2P31-201ENST00000402702 684 ntBASIC2.7□□□□□ -1.98
BRCA1P38398 DEFB130D-201ENST00000426866 237 ntBASIC2.7□□□□□ -1.98
BRCA1P38398 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC2.7□□□□□ -1.98
BRCA1P38398 AC234064.1-201ENST00000436312 247 ntBASIC2.7□□□□□ -1.98
BRCA1P38398 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC2.7□□□□□ -1.98
BRCA1P38398 AC004866.2-201ENST00000438285 481 ntBASIC2.7□□□□□ -1.98
BRCA1P38398 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.7□□□□□ -1.98
BRCA1P38398 RPL7P55-201ENST00000450522 746 ntBASIC2.7□□□□□ -1.98
BRCA1P38398 RNU6-27P-201ENST00000516146 107 ntBASIC2.7□□□□□ -1.98
BRCA1P38398 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC2.7□□□□□ -1.98
BRCA1P38398 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC2.7□□□□□ -1.98
BRCA1P38398 EEF1B2P4-201ENST00000551398 348 ntBASIC2.7□□□□□ -1.98
BRCA1P38398 AC126177.3-201ENST00000551839 688 ntBASIC2.7□□□□□ -1.98
BRCA1P38398 AC107294.3-201ENST00000609211 526 ntBASIC2.7□□□□□ -1.98
BRCA1P38398 AC245517.5-201ENST00000611529 162 ntBASIC2.7□□□□□ -1.98
BRCA1P38398 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms