Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RNU6-1316P-201ENST00000384242 108 ntBASIC3.46□□□□□ -1.86
MSH3P20585 Y_RNA.559-201ENST00000384686 107 ntBASIC3.46□□□□□ -1.86
MSH3P20585 MT-TC-201ENST00000387405 66 ntBASIC3.46□□□□□ -1.86
MSH3P20585 DEFB108C-201ENST00000400154 252 ntBASIC3.46□□□□□ -1.86
MSH3P20585 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.46□□□□□ -1.86
MSH3P20585 MTCO1P17-201ENST00000411522 491 ntBASIC3.46□□□□□ -1.86
MSH3P20585 CRYBB2P1-203ENST00000415709 538 ntBASIC3.46□□□□□ -1.86
MSH3P20585 ZNF885P-201ENST00000420174 1098 ntBASIC3.46□□□□□ -1.86
MSH3P20585 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.46□□□□□ -1.86
MSH3P20585 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
MSH3P20585 AC069157.1-201ENST00000421749 137 ntBASIC3.46□□□□□ -1.86
MSH3P20585 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.46□□□□□ -1.86
MSH3P20585 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
MSH3P20585 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
MSH3P20585 EZH2P1-201ENST00000431167 291 ntBASIC3.46□□□□□ -1.86
MSH3P20585 SDCBPP1-201ENST00000440192 890 ntBASIC3.46□□□□□ -1.86
MSH3P20585 AC092641.1-201ENST00000440229 772 ntBASIC3.46□□□□□ -1.86
MSH3P20585 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.46□□□□□ -1.86
MSH3P20585 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC3.46□□□□□ -1.86
MSH3P20585 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.46□□□□□ -1.86
MSH3P20585 PDSS1P2-201ENST00000449397 678 ntBASIC3.46□□□□□ -1.86
MSH3P20585 AC006539.3-201ENST00000454258 129 ntBASIC3.46□□□□□ -1.86
MSH3P20585 AL445669.2-201ENST00000454425 421 ntBASIC3.46□□□□□ -1.86
MSH3P20585 BTF3P5-201ENST00000457252 467 ntBASIC3.46□□□□□ -1.86
MSH3P20585 RPL21P129-201ENST00000491732 478 ntBASIC3.46□□□□□ -1.86
MSH3P20585 FCF1P3-201ENST00000496394 590 ntBASIC3.46□□□□□ -1.86
MSH3P20585 AC020893.1-201ENST00000502452 580 ntBASIC3.46□□□□□ -1.86
MSH3P20585 AC110768.1-201ENST00000509222 400 ntBASIC3.46□□□□□ -1.86
MSH3P20585 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.46□□□□□ -1.86
MSH3P20585 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.46□□□□□ -1.86
MSH3P20585 AC005921.1-201ENST00000510589 286 ntBASIC3.46□□□□□ -1.86
MSH3P20585 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC3.46□□□□□ -1.86
MSH3P20585 AC093677.1-201ENST00000514414 678 ntBASIC3.46□□□□□ -1.86
MSH3P20585 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.46□□□□□ -1.86
MSH3P20585 AC116347.2-201ENST00000514912 523 ntBASIC3.46□□□□□ -1.86
MSH3P20585 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.46□□□□□ -1.86
MSH3P20585 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.46□□□□□ -1.86
MSH3P20585 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.46□□□□□ -1.86
MSH3P20585 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.46□□□□□ -1.86
MSH3P20585 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC3.46□□□□□ -1.86
MSH3P20585 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC3.46□□□□□ -1.86
MSH3P20585 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.46□□□□□ -1.86
MSH3P20585 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.46□□□□□ -1.86
MSH3P20585 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.46□□□□□ -1.86
MSH3P20585 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.46□□□□□ -1.86
MSH3P20585 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.46□□□□□ -1.86
MSH3P20585 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.46□□□□□ -1.86
MSH3P20585 MIR3611-201ENST00000584484 83 ntBASIC3.46□□□□□ -1.86
MSH3P20585 AP000254.1-201ENST00000609934 520 ntBASIC3.46□□□□□ -1.86
MSH3P20585 AC010678.1-201ENST00000614118 713 ntBASIC3.46□□□□□ -1.86
MSH3P20585 AL596245.1-201ENST00000618994 362 ntBASIC3.46□□□□□ -1.86
MSH3P20585 AC022149.2-201ENST00000621061 203 ntBASIC3.46□□□□□ -1.86
MSH3P20585 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.46□□□□□ -1.86
MSH3P20585 AL357559.1-201ENST00000622228 274 ntBASIC3.46□□□□□ -1.86
MSH3P20585 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.46□□□□□ -1.86
MSH3P20585 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.46□□□□□ -1.86
MSH3P20585 AC244258.1-201ENST00000637553 1071 ntBASIC3.46□□□□□ -1.86
MSH3P20585 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
MSH3P20585 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
MSH3P20585 AC138915.3-201ENST00000562908 1389 ntBASIC3.46□□□□□ -1.86
MSH3P20585 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
MSH3P20585 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
MSH3P20585 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
MSH3P20585 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.46□□□□□ -1.86
MSH3P20585 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
MSH3P20585 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
MSH3P20585 AC091152.2-201ENST00000591628 2569 ntBASIC3.46□□□□□ -1.86
MSH3P20585 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.45□□□□□ -1.86
MSH3P20585 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.45□□□□□ -1.86
MSH3P20585 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
MSH3P20585 SNORA31-201ENST00000362607 130 ntBASIC3.45□□□□□ -1.86
MSH3P20585 RNU4-75P-201ENST00000364621 146 ntBASIC3.45□□□□□ -1.86
MSH3P20585 OR5H15-201ENST00000383696 930 ntBASIC3.45□□□□□ -1.86
MSH3P20585 SNORA75-201ENST00000384158 137 ntBASIC3.45□□□□□ -1.86
MSH3P20585 MIR449B-201ENST00000384995 97 ntBASIC3.45□□□□□ -1.86
MSH3P20585 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC3.45□□□□□ -1.86
MSH3P20585 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.45□□□□□ -1.86
MSH3P20585 CDK8P2-201ENST00000415020 547 ntBASIC3.45□□□□□ -1.86
MSH3P20585 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC3.45□□□□□ -1.86
MSH3P20585 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.45□□□□□ -1.86
MSH3P20585 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.45□□□□□ -1.86
MSH3P20585 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.45□□□□□ -1.86
MSH3P20585 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.45□□□□□ -1.86
MSH3P20585 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.45□□□□□ -1.86
MSH3P20585 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC3.45□□□□□ -1.86
MSH3P20585 MTCYBP45-201ENST00000435243 565 ntBASIC3.45□□□□□ -1.86
MSH3P20585 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.45□□□□□ -1.86
MSH3P20585 RPS24P1-201ENST00000438550 371 ntBASIC3.45□□□□□ -1.86
MSH3P20585 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC3.45□□□□□ -1.86
MSH3P20585 AC092473.1-201ENST00000441098 221 ntBASIC3.45□□□□□ -1.86
MSH3P20585 VN1R34P-201ENST00000447387 883 ntBASIC3.45□□□□□ -1.86
MSH3P20585 SSXP1-201ENST00000453640 473 ntBASIC3.45□□□□□ -1.86
MSH3P20585 HMGB1P15-201ENST00000453854 435 ntBASIC3.45□□□□□ -1.86
MSH3P20585 RPS20P24-201ENST00000457473 361 ntBASIC3.45□□□□□ -1.86
MSH3P20585 U3.44-201ENST00000458938 192 ntBASIC3.45□□□□□ -1.86
MSH3P20585 AC025518.1-201ENST00000479856 347 ntBASIC3.45□□□□□ -1.86
MSH3P20585 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.45□□□□□ -1.86
MSH3P20585 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.45□□□□□ -1.86
MSH3P20585 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC3.45□□□□□ -1.86
MSH3P20585 TXNP6-201ENST00000510190 310 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms