Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC1.61□□□□□ -2.15
VCANP13611 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.61□□□□□ -2.15
VCANP13611 AC090751.1-201ENST00000566966 267 ntBASIC1.61□□□□□ -2.15
VCANP13611 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC1.61□□□□□ -2.15
VCANP13611 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
VCANP13611 RNU4-91P-201ENST00000364778 135 ntBASIC1.61□□□□□ -2.15
VCANP13611 U3.40-201ENST00000408706 208 ntBASIC1.61□□□□□ -2.15
VCANP13611 AL691517.1-201ENST00000440833 1235 ntBASIC1.61□□□□□ -2.15
VCANP13611 AC069528.1-202ENST00000482888 637 ntBASIC1.61□□□□□ -2.15
VCANP13611 AC008126.1-201ENST00000549019 480 ntBASIC1.61□□□□□ -2.15
VCANP13611 VIS1.1-201ENST00000610517 203 ntBASIC1.61□□□□□ -2.15
VCANP13611 FABP5P3-201ENST00000437960 408 ntBASIC1.6□□□□□ -2.15
VCANP13611 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC1.6□□□□□ -2.15
VCANP13611 TPRKBP1-201ENST00000456243 481 ntBASIC1.6□□□□□ -2.15
VCANP13611 AC092451.2-201ENST00000538746 658 ntBASIC1.6□□□□□ -2.15
VCANP13611 AL122125.1-201ENST00000616999 600 ntBASIC1.6□□□□□ -2.15
VCANP13611 AC092159.4-201ENST00000624944 550 ntBASIC1.6□□□□□ -2.15
VCANP13611 USP9YP27-201ENST00000418455 438 ntBASIC1.6□□□□□ -2.15
VCANP13611 AL445305.1-201ENST00000432577 575 ntBASIC1.6□□□□□ -2.15
VCANP13611 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.6□□□□□ -2.15
VCANP13611 RPL39P40-201ENST00000445481 146 ntBASIC1.6□□□□□ -2.15
VCANP13611 KATNBL1P4-201ENST00000503545 918 ntBASIC1.6□□□□□ -2.15
VCANP13611 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC1.6□□□□□ -2.15
VCANP13611 MTND4LP5-201ENST00000605152 292 ntBASIC1.6□□□□□ -2.15
VCANP13611 AC012150.2-201ENST00000621300 544 ntBASIC1.6□□□□□ -2.15
VCANP13611 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.15
VCANP13611 MIR517C-201ENST00000385103 95 ntBASIC1.59□□□□□ -2.15
VCANP13611 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC1.59□□□□□ -2.15
VCANP13611 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC1.59□□□□□ -2.15
VCANP13611 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC1.59□□□□□ -2.15
VCANP13611 AL049840.6-202ENST00000603373 279 ntBASIC1.59□□□□□ -2.15
VCANP13611 BNIP3P4-201ENST00000604946 565 ntBASIC1.59□□□□□ -2.15
VCANP13611 MTCO1P6-201ENST00000481192 1384 ntBASIC1.59□□□□□ -2.15
VCANP13611 AC092447.7-201ENST00000422212 1621 ntBASIC1.59□□□□□ -2.15
VCANP13611 Y_RNA.60-201ENST00000362831 98 ntBASIC1.59□□□□□ -2.15
VCANP13611 RNA5SP363-201ENST00000365072 115 ntBASIC1.59□□□□□ -2.15
VCANP13611 RNU6-35P-201ENST00000384530 107 ntBASIC1.59□□□□□ -2.15
VCANP13611 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.59□□□□□ -2.15
VCANP13611 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC1.59□□□□□ -2.15
VCANP13611 BX510359.4-201ENST00000423750 193 ntBASIC1.59□□□□□ -2.15
VCANP13611 NEK4P1-201ENST00000433383 879 ntBASIC1.59□□□□□ -2.15
VCANP13611 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC1.59□□□□□ -2.15
VCANP13611 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC1.59□□□□□ -2.15
VCANP13611 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC1.59□□□□□ -2.15
VCANP13611 HMGN2P47-201ENST00000559378 272 ntBASIC1.59□□□□□ -2.15
VCANP13611 AL592494.3-201ENST00000609485 464 ntBASIC1.59□□□□□ -2.15
VCANP13611 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC1.59□□□□□ -2.15
VCANP13611 BTBD10P2-201ENST00000404779 676 ntBASIC1.59□□□□□ -2.16
VCANP13611 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC1.59□□□□□ -2.16
VCANP13611 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC1.59□□□□□ -2.16
VCANP13611 AC090819.1-201ENST00000523800 1111 ntBASIC1.59□□□□□ -2.16
VCANP13611 AC105245.1-201ENST00000581934 244 ntBASIC1.59□□□□□ -2.16
VCANP13611 AC013444.2-201ENST00000603317 787 ntBASIC1.59□□□□□ -2.16
VCANP13611 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC1.59□□□□□ -2.16
VCANP13611 MTCO1P7-201ENST00000419523 1542 ntBASIC1.59□□□□□ -2.16
VCANP13611 NF1-214ENST00000490416 1329 ntTSL 3 BASIC1.58□□□□□ -2.16
VCANP13611 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
VCANP13611 U3.15-201ENST00000365398 212 ntBASIC1.58□□□□□ -2.16
VCANP13611 Y_RNA.390-201ENST00000383932 102 ntBASIC1.58□□□□□ -2.16
VCANP13611 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC1.58□□□□□ -2.16
VCANP13611 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.58□□□□□ -2.16
VCANP13611 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC1.58□□□□□ -2.16
VCANP13611 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC1.58□□□□□ -2.16
VCANP13611 AC092954.1-201ENST00000609121 445 ntBASIC1.58□□□□□ -2.16
VCANP13611 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
VCANP13611 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC1.58□□□□□ -2.16
VCANP13611 AL589765.3-201ENST00000446084 462 ntBASIC1.58□□□□□ -2.16
VCANP13611 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC1.58□□□□□ -2.16
VCANP13611 AGGF1P8-201ENST00000562979 1000 ntBASIC1.58□□□□□ -2.16
VCANP13611 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC1.58□□□□□ -2.16
VCANP13611 OR7L1P-201ENST00000456181 380 ntBASIC1.58□□□□□ -2.16
VCANP13611 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC1.58□□□□□ -2.16
VCANP13611 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.57□□□□□ -2.16
VCANP13611 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
VCANP13611 AL513185.2-201ENST00000425543 193 ntBASIC1.57□□□□□ -2.16
VCANP13611 RPL23AP35-201ENST00000451906 501 ntBASIC1.57□□□□□ -2.16
VCANP13611 SNORA70.14-201ENST00000516205 110 ntBASIC1.57□□□□□ -2.16
VCANP13611 Clostridiales-1.2-201ENST00000636724 160 ntBASIC1.57□□□□□ -2.16
VCANP13611 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
VCANP13611 CYCSP48-201ENST00000417124 323 ntBASIC1.57□□□□□ -2.16
VCANP13611 RPL31P35-201ENST00000431058 377 ntBASIC1.57□□□□□ -2.16
VCANP13611 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC1.57□□□□□ -2.16
VCANP13611 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC1.57□□□□□ -2.16
VCANP13611 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.57□□□□□ -2.16
VCANP13611 HIGD1AP11-201ENST00000438361 280 ntBASIC1.57□□□□□ -2.16
VCANP13611 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC1.57□□□□□ -2.16
VCANP13611 RNA5SP385-201ENST00000515947 110 ntBASIC1.57□□□□□ -2.16
VCANP13611 AC093331.1-201ENST00000521474 169 ntBASIC1.57□□□□□ -2.16
VCANP13611 AKIRIN1P1-201ENST00000547384 544 ntBASIC1.57□□□□□ -2.16
VCANP13611 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC1.57□□□□□ -2.16
VCANP13611 AL138955.1-201ENST00000622881 1040 ntBASIC1.57□□□□□ -2.16
VCANP13611 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.57□□□□□ -2.16
VCANP13611 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
VCANP13611 WWP1P1-201ENST00000466609 2769 ntBASIC1.57□□□□□ -2.16
VCANP13611 FABP5P6-201ENST00000510588 409 ntBASIC1.56□□□□□ -2.16
VCANP13611 TRAV28-201ENST00000557548 323 ntBASIC1.56□□□□□ -2.16
VCANP13611 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.56□□□□□ -2.16
VCANP13611 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
VCANP13611 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
VCANP13611 SLC9B1P2-201ENST00000398120 1184 ntBASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms