Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL591034.3-201ENST00000605511 685 ntBASIC4.66□□□□□ -1.66
HMGB1P09429 AC107294.3-201ENST00000609211 526 ntBASIC4.66□□□□□ -1.66
HMGB1P09429 MIR6867-201ENST00000610636 67 ntBASIC4.66□□□□□ -1.66
HMGB1P09429 AC002064.3-201ENST00000623448 346 ntBASIC4.66□□□□□ -1.66
HMGB1P09429 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC4.66□□□□□ -1.66
HMGB1P09429 AC010149.2-201ENST00000637608 315 ntBASIC4.66□□□□□ -1.66
HMGB1P09429 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC4.66□□□□□ -1.66
HMGB1P09429 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
HMGB1P09429 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.66
HMGB1P09429 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
HMGB1P09429 RLIMP1-201ENST00000339626 1680 ntBASIC4.65□□□□□ -1.66
HMGB1P09429 AL121657.1-201ENST00000327215 531 ntBASIC4.65□□□□□ -1.67
HMGB1P09429 RNU6-500P-201ENST00000362349 107 ntBASIC4.65□□□□□ -1.67
HMGB1P09429 RN7SKP280-201ENST00000364196 304 ntBASIC4.65□□□□□ -1.67
HMGB1P09429 Y_RNA.245-201ENST00000364493 95 ntBASIC4.65□□□□□ -1.67
HMGB1P09429 SNORD21-201ENST00000383953 95 ntBASIC4.65□□□□□ -1.67
HMGB1P09429 SNORA11B-201ENST00000408175 129 ntBASIC4.65□□□□□ -1.67
HMGB1P09429 MIR1289-1-201ENST00000408836 144 ntBASIC4.65□□□□□ -1.67
HMGB1P09429 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC4.65□□□□□ -1.67
HMGB1P09429 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
HMGB1P09429 RPL17P12-201ENST00000413391 526 ntBASIC4.65□□□□□ -1.67
HMGB1P09429 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC4.65□□□□□ -1.67
HMGB1P09429 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC4.65□□□□□ -1.67
HMGB1P09429 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC4.65□□□□□ -1.67
HMGB1P09429 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC4.65□□□□□ -1.67
HMGB1P09429 AC118469.1-201ENST00000442943 488 ntBASIC4.65□□□□□ -1.67
HMGB1P09429 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC4.65□□□□□ -1.67
HMGB1P09429 MGST1-215ENST00000540056 546 ntTSL 3 BASIC4.65□□□□□ -1.67
HMGB1P09429 LRRC34P1-201ENST00000542742 915 ntBASIC4.65□□□□□ -1.67
HMGB1P09429 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC4.65□□□□□ -1.67
HMGB1P09429 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC4.65□□□□□ -1.67
HMGB1P09429 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.65□□□□□ -1.67
HMGB1P09429 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC4.65□□□□□ -1.67
HMGB1P09429 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC4.65□□□□□ -1.67
HMGB1P09429 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC4.65□□□□□ -1.67
HMGB1P09429 AL391813.2-201ENST00000609113 322 ntBASIC4.65□□□□□ -1.67
HMGB1P09429 FTX_3.1-201ENST00000610451 147 ntBASIC4.65□□□□□ -1.67
HMGB1P09429 AL136295.6-201ENST00000610486 658 ntBASIC4.65□□□□□ -1.67
HMGB1P09429 AC009159.1-201ENST00000618386 642 ntBASIC4.65□□□□□ -1.67
HMGB1P09429 U7.8-201ENST00000619968 63 ntBASIC4.65□□□□□ -1.67
HMGB1P09429 MIR6758-201ENST00000620653 63 ntBASIC4.65□□□□□ -1.67
HMGB1P09429 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
HMGB1P09429 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.65□□□□□ -1.67
HMGB1P09429 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
HMGB1P09429 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
HMGB1P09429 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.64□□□□□ -1.67
HMGB1P09429 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
HMGB1P09429 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.64□□□□□ -1.67
HMGB1P09429 RPL32P3-201ENST00000359025 275 ntBASIC4.64□□□□□ -1.67
HMGB1P09429 RNY3P13-201ENST00000365542 102 ntBASIC4.64□□□□□ -1.67
HMGB1P09429 Y_RNA.560-201ENST00000384689 102 ntBASIC4.64□□□□□ -1.67
HMGB1P09429 TEX41-202ENST00000414256 604 ntTSL 5 BASIC4.64□□□□□ -1.67
HMGB1P09429 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC4.64□□□□□ -1.67
HMGB1P09429 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC4.64□□□□□ -1.67
HMGB1P09429 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.64□□□□□ -1.67
HMGB1P09429 AL512286.1-201ENST00000439244 400 ntBASIC4.64□□□□□ -1.67
HMGB1P09429 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC4.64□□□□□ -1.67
HMGB1P09429 AC114755.5-201ENST00000447760 831 ntBASIC4.64□□□□□ -1.67
HMGB1P09429 RPL7P15-201ENST00000461190 712 ntBASIC4.64□□□□□ -1.67
HMGB1P09429 AC023598.1-201ENST00000472521 361 ntBASIC4.64□□□□□ -1.67
HMGB1P09429 AC004263.1-201ENST00000479327 332 ntBASIC4.64□□□□□ -1.67
HMGB1P09429 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.64□□□□□ -1.67
HMGB1P09429 RN7SKP282-201ENST00000516824 299 ntBASIC4.64□□□□□ -1.67
HMGB1P09429 NDUFA5P2-201ENST00000519723 344 ntBASIC4.64□□□□□ -1.67
HMGB1P09429 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.64□□□□□ -1.67
HMGB1P09429 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.64□□□□□ -1.67
HMGB1P09429 AL391261.3-201ENST00000557194 520 ntBASIC4.64□□□□□ -1.67
HMGB1P09429 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC4.64□□□□□ -1.67
HMGB1P09429 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC4.64□□□□□ -1.67
HMGB1P09429 AC091489.2-201ENST00000566263 604 ntBASIC4.64□□□□□ -1.67
HMGB1P09429 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC4.64□□□□□ -1.67
HMGB1P09429 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC4.64□□□□□ -1.67
HMGB1P09429 MIR3146-201ENST00000580367 79 ntBASIC4.64□□□□□ -1.67
HMGB1P09429 HMGN2P15-201ENST00000585707 270 ntBASIC4.64□□□□□ -1.67
HMGB1P09429 AC121334.2-201ENST00000605387 271 ntBASIC4.64□□□□□ -1.67
HMGB1P09429 AC239868.4-201ENST00000608318 671 ntBASIC4.64□□□□□ -1.67
HMGB1P09429 AC108747.1-201ENST00000609508 535 ntBASIC4.64□□□□□ -1.67
HMGB1P09429 AC004223.4-201ENST00000612426 332 ntBASIC4.64□□□□□ -1.67
HMGB1P09429 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC4.64□□□□□ -1.67
HMGB1P09429 AC091304.6-201ENST00000619761 202 ntBASIC4.64□□□□□ -1.67
HMGB1P09429 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.64□□□□□ -1.67
HMGB1P09429 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
HMGB1P09429 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
HMGB1P09429 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
HMGB1P09429 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
HMGB1P09429 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HMGB1P09429 CEP170P1-201ENST00000502249 4587 ntBASIC4.63□□□□□ -1.67
HMGB1P09429 ZBTB8OSP1-201ENST00000342688 498 ntBASIC4.63□□□□□ -1.67
HMGB1P09429 RNU5F-6P-201ENST00000362979 116 ntBASIC4.63□□□□□ -1.67
HMGB1P09429 RNU6-884P-201ENST00000363889 107 ntBASIC4.63□□□□□ -1.67
HMGB1P09429 RNU6-533P-201ENST00000384144 107 ntBASIC4.63□□□□□ -1.67
HMGB1P09429 MIR199A2-201ENST00000385289 110 ntBASIC4.63□□□□□ -1.67
HMGB1P09429 RPL7P25-201ENST00000404151 721 ntBASIC4.63□□□□□ -1.67
HMGB1P09429 RNA5SP317-201ENST00000410176 116 ntBASIC4.63□□□□□ -1.67
HMGB1P09429 RNU4-6P-201ENST00000410804 122 ntBASIC4.63□□□□□ -1.67
HMGB1P09429 RNA5SP311-201ENST00000411290 116 ntBASIC4.63□□□□□ -1.67
HMGB1P09429 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.63□□□□□ -1.67
HMGB1P09429 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC4.63□□□□□ -1.67
HMGB1P09429 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HMGB1P09429 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 123.2 ms