Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 RNU6-227P-201ENST00000362865 103 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 Y_RNA.230-201ENST00000364348 109 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 RNU6-512P-201ENST00000364438 103 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 RNA5SP77-201ENST00000365394 120 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 RNU6-20P-201ENST00000384106 107 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 RN7SKP284-201ENST00000411002 343 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 AL592148.1-201ENST00000413568 445 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 AL117339.3-201ENST00000418733 162 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 RPS12P23-201ENST00000419579 400 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 ATP5A1P8-201ENST00000423669 1291 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 H3F3BP1-201ENST00000440551 403 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 PABPC1P6-201ENST00000445594 1829 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 RPL23AP3-201ENST00000453844 468 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 AL133244.1-201ENST00000456007 258 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 RNU7-107P-201ENST00000459121 61 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 RPS27AP13-201ENST00000498403 237 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 RNA5SP206-201ENST00000516703 121 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 AC026826.3-201ENST00000561747 158 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 MT1CP-201ENST00000567054 174 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 MTND5P34-201ENST00000568888 325 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 RN7SL230P-201ENST00000580835 303 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 AL645944.1-201ENST00000603857 493 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 MIR3658-201ENST00000636291 56 ntBASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC6.12□□□□□ -1.43
VPS9D1Q9Y2B5 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 SNORD1C-201ENST00000363315 78 ntBASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 Y_RNA.172-201ENST00000363765 102 ntBASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 RNA5SP156-201ENST00000410250 110 ntBASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 AC017078.1-201ENST00000416146 368 ntBASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 LINC00328-2P-201ENST00000436585 219 ntBASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 RNU6-1218P-201ENST00000458990 108 ntBASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 AC098818.1-201ENST00000478593 252 ntBASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 PPP1R11P1-201ENST00000486095 376 ntBASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 RPL23AP40-201ENST00000487630 390 ntBASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 AK3P2-201ENST00000507976 429 ntBASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 APOBEC3AP1-201ENST00000511396 287 ntBASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 GSTP1P1-201ENST00000548078 319 ntBASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 CASC22-201ENST00000569713 386 ntTSL 5 BASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 AC060766.3-201ENST00000591442 263 ntBASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 AC012368.3-201ENST00000604190 219 ntBASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 AC004158.1-201ENST00000564508 4319 ntBASIC6.11□□□□□ -1.43
VPS9D1Q9Y2B5 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
VPS9D1Q9Y2B5 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
VPS9D1Q9Y2B5 AC140479.2-201ENST00000421567 3130 ntBASIC6.1□□□□□ -1.43
VPS9D1Q9Y2B5 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
VPS9D1Q9Y2B5 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms