Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AC005951.1-201ENST00000576706 485 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AC068790.3-201ENST00000602988 553 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC2.96□□□□□ -1.94
FOXA2Q9Y261 NUTF2P8-201ENST00000604593 363 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AC093424.1-201ENST00000604999 338 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AC091965.4-201ENST00000607691 587 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AL450489.1-201ENST00000612071 468 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AC079395.3-201ENST00000615161 484 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AC092628.2-201ENST00000622492 339 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AC091965.5-201ENST00000624785 342 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 AP000553.6-201ENST00000641242 118 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC2.96□□□□□ -1.94
FOXA2Q9Y261 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC2.96□□□□□ -1.94
FOXA2Q9Y261 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.96□□□□□ -1.94
FOXA2Q9Y261 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
FOXA2Q9Y261 PWAR6-201ENST00000552334 4618 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 TNPO1P3-201ENST00000436471 2662 ntBASIC2.96□□□□□ -1.94
FOXA2Q9Y261 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 RNU6-799P-201ENST00000363567 107 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AC007066.1-201ENST00000392902 381 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 ATP5F1P3-201ENST00000397213 657 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AC119751.3-201ENST00000399720 670 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 Z85995.1-201ENST00000415547 335 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AC069157.1-201ENST00000421749 137 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AC012498.1-201ENST00000424037 437 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 FTH1P1-201ENST00000437933 532 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 MTCO3P45-201ENST00000443036 613 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 MTCYBP3-201ENST00000445588 1137 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 ELOCP30-201ENST00000447108 299 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AC092798.1-201ENST00000458542 409 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AC091564.1-201ENST00000464563 479 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 SETP11-201ENST00000473027 690 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AC006483.1-201ENST00000487308 313 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 LINC00888-204ENST00000487386 421 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 CDC42P4-201ENST00000510507 563 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AC010265.1-201ENST00000513509 211 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AC026402.1-201ENST00000513642 170 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 RNU6-678P-201ENST00000516832 109 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 NAT2-202ENST00000520116 716 ntTSL 3 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 MTCO1P49-201ENST00000523429 802 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AP000857.1-201ENST00000532151 543 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AL133153.1-201ENST00000557756 303 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AC106785.1-201ENST00000565935 262 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AL161629.2-201ENST00000615347 275 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 U7.8-201ENST00000619968 63 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AL732618.1-201ENST00000623251 301 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 AP000676.4-201ENST00000624659 623 ntBASIC2.95□□□□□ -1.94
FOXA2Q9Y261 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
FOXA2Q9Y261 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 MAPK10-362ENST00000641864 4484 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 MAPK10-322ENST00000641485 4530 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 AC006378.2-201ENST00000623178 2476 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 RNA5SP42-201ENST00000364278 115 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 CRP-203ENST00000368111 512 ntTSL 3 BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
FOXA2Q9Y261 RNU6-198P-201ENST00000384258 104 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 RNU6-1035P-201ENST00000384477 107 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 MIR19A-201ENST00000384878 82 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 AL136116.1-201ENST00000403591 381 ntBASIC2.94□□□□□ -1.94
FOXA2Q9Y261 RNU6ATAC-201ENST00000408749 126 ntBASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms