Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 AC002486.1-201ENST00000435098 391 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 AC108059.3-201ENST00000456388 214 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 AL672167.3-201ENST00000465951 960 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 MTAPP1-201ENST00000489154 819 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 AC110792.1-201ENST00000491826 472 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 AC023194.1-201ENST00000493084 308 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 RNU6-718P-201ENST00000516166 105 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 RNU6-528P-201ENST00000516926 100 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 RNU4-60P-201ENST00000517239 135 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 HIGD1AP5-201ENST00000529959 259 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 AP003034.1-201ENST00000534621 422 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 CR383656.7-201ENST00000548164 174 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 COX6CP3-201ENST00000580869 223 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 AC004908.2-201ENST00000609090 574 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 AC112484.5-201ENST00000624189 228 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 AL159972.1-201ENST00000625150 448 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 AC244205.2-202ENST00000635781 342 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 AL138713.1-201ENST00000624026 2130 ntBASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
LIMCH1Q9UPQ0 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 MTND5P3-201ENST00000438536 1800 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 AC126755.2-208ENST00000327792 462 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 AC138969.1-213ENST00000331436 462 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 Y_RNA.1-201ENST00000352915 104 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 RNA5SP443-201ENST00000363083 132 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 RNU5A-8P-201ENST00000364102 114 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 RNU6-1078P-201ENST00000364522 103 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 RNU4-12P-201ENST00000365233 139 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 AL022722.2-201ENST00000402519 180 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 AC019097.1-201ENST00000424783 735 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 MTCO2P11-201ENST00000431069 680 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 RAC1P7-201ENST00000445367 377 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 AC013267.1-201ENST00000458227 267 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 MTCO3P38-201ENST00000468910 766 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 AC017037.2-201ENST00000513850 890 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 MIR2114-201ENST00000516645 80 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 RN7SKP209-201ENST00000516888 304 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 AC103783.1-201ENST00000520506 373 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 AC025946.2-201ENST00000603398 234 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 MIR6716-201ENST00000613413 80 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 uc_338.12-201ENST00000616344 181 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 AC004825.2-201ENST00000616634 455 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 AL356321.1-201ENST00000621360 228 ntBASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
LIMCH1Q9UPQ0 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 AC006504.1-201ENST00000562493 3666 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 RNU6-181P-201ENST00000363225 107 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 RN7SKP44-201ENST00000363602 316 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 RNU4-1-201ENST00000363925 141 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 SNORA20.2-201ENST00000383922 131 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 RNU6-278P-201ENST00000390945 109 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 FGFR1OP2P1-201ENST00000395943 500 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 RPL21P65-201ENST00000406094 466 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 AC016712.1-201ENST00000431088 378 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 AC000111.3-201ENST00000433478 193 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 TIMM9P1-201ENST00000436122 256 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 SNORA71B-202ENST00000439232 272 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 Z99127.3-201ENST00000448158 395 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 RPS23P7-201ENST00000466210 444 ntBASIC4.5□□□□□ -1.69
LIMCH1Q9UPQ0 RPL7P19-201ENST00000469948 618 ntBASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms